Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4292

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12659 and 12660 are separated by 995 nucleotides mRNA_4291: 12659 - Hypothetical Protein, at 1,815,371 to 1,816,823 12659 mRNA_4292: 12660 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 1,817,819 to 1,819,208 12660

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,816,947 + -0.7
1,816,965 + +0.6
1,816,980 + +0.0
1,817,085 - +0.1
1,817,107 - +1.8
1,817,125 - +0.9
1,817,135 - -2.5
1,817,244 - +0.6
1,817,245 + -1.2
1,817,269 - +3.4
1,817,285 + -0.1
1,817,290 + -0.6
1,817,419 + -0.9
1,817,419 + +0.7
1,817,431 + -1.5
1,817,440 + -0.4
1,817,441 - +0.5
1,817,447 + +1.8
1,817,455 - +1.5
1,817,457 + +0.6
1,817,460 + +0.5
1,817,541 - +0.1
1,817,560 + -0.1
1,817,566 + +0.8
1,817,596 + +0.6
1,817,620 + +3.8
1,817,623 - -2.4
1,817,728 - +1.3
1,818,044 - 12660 mRNA_4292 0.16 +2.4
1,818,618 - 12660 mRNA_4292 0.57 -1.4
1,818,765 + 12660 mRNA_4292 0.68 -1.3
1,819,061 + 12660 mRNA_4292 0.89 -2.5
1,819,069 + 12660 mRNA_4292 0.90 +2.3
1,819,077 + +0.9
1,819,363 + +1.1
1,819,367 - +0.1
1,819,980 + +0.0

Or see this region's nucleotide sequence