Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4337

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12705 and 12706 are separated by 532 nucleotides mRNA_4337: 12705 - HMMPfam-Secretory lipase-PF03583,SUPERFAMILY--SSF53474, at 1,940,222 to 1,941,811 12705 mRNA_4338: 12706 - SUPERFAMILY--SSF53098, at 1,942,344 to 1,943,662 12706

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,939,383 + +1.6
1,939,605 + +0.3
1,939,732 + -2.4
1,939,831 - +1.5
1,939,953 + -0.1
1,939,980 - +0.1
1,940,049 - -1.2
1,940,095 - +0.1
1,940,100 - -2.3
1,940,339 - +0.3
1,940,344 + +3.6
1,940,671 - 12705 mRNA_4337 0.28 -0.2
1,941,122 + 12705 mRNA_4337 0.57 +0.9
1,941,264 - 12705 mRNA_4337 0.66 +0.4
1,941,279 + 12705 mRNA_4337 0.66 +2.1
1,941,425 + 12705 mRNA_4337 0.76 +0.3
1,941,526 + 12705 mRNA_4337 0.82 -1.2
1,941,555 + 12705 mRNA_4337 0.84 +0.5
1,942,158 + -0.1
1,942,162 + -0.5
1,942,168 + -0.8
1,942,172 + +0.4
1,942,309 + +0.9
1,942,418 + +0.5
1,942,447 - -1.4
1,942,453 + +0.4
1,942,723 - 12706 mRNA_4338 0.29 -0.5

Or see this region's nucleotide sequence