Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4387

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12754 and 12755 are separated by 355 nucleotides12755 and 12756 are separated by 459 nucleotides mRNA_4386: 12754 - BLAST polysaccharide lyase family 14 protein [Hypholoma sub..., at 70,020 to 71,335 12754 mRNA_4387: 12755 - HMMPfam-Ctf8-PF09696, at 71,691 to 72,315 12755 mRNA_4388: 12756 - KOG2084 Predicted histone tail methylase containing SET domain, at 72,775 to 74,031 12756

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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70,720 - 12754 mRNA_4386 0.53 +0.5
70,863 - 12754 mRNA_4386 0.64 -1.2
70,864 - 12754 mRNA_4386 0.64 +1.8
70,894 + 12754 mRNA_4386 0.66 -0.7
70,932 + 12754 mRNA_4386 0.69 -0.3
70,978 - 12754 mRNA_4386 0.73 -0.8
71,435 + +1.2
71,446 + +1.2
71,452 + +0.9
71,462 + +1.6
71,464 + +0.3
71,532 - -0.5
71,612 + +0.8
71,774 + 12755 mRNA_4387 0.13 +0.5
72,184 + 12755 mRNA_4387 0.79 -2.5
72,219 + 12755 mRNA_4387 0.84 +0.3
72,832 - +0.4
73,016 - 12756 mRNA_4388 0.19 +2.2
73,056 - 12756 mRNA_4388 0.22 -0.5

Or see this region's nucleotide sequence