Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4408

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12775 and 12776 are separated by 384 nucleotides12776 and 12777 are separated by 421 nucleotides mRNA_4407: 12775 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 109,306 to 110,822 12775 mRNA_4408: 12776 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 111,207 to 112,706 12776 mRNA_4409: 12777 - KOG1218 Proteins containing Ca2+-binding EGF-like domains, at 113,128 to 114,818 12777

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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110,390 - 12775 mRNA_4407 0.71 -1.1
110,534 + 12775 mRNA_4407 0.81 +0.3
110,566 + 12775 mRNA_4407 0.83 +0.5
110,571 - 12775 mRNA_4407 0.83 -2.0
110,986 + +2.7
110,993 - +0.0
111,649 - 12776 mRNA_4408 0.29 -0.8
111,713 - 12776 mRNA_4408 0.34 -0.0
112,123 - 12776 mRNA_4408 0.61 -0.9
112,169 + 12776 mRNA_4408 0.64 +0.6
112,435 - 12776 mRNA_4408 0.82 -0.3
112,436 + 12776 mRNA_4408 0.82 -1.5
112,560 - -0.0
112,745 - -0.1
112,888 + +0.9
112,998 - +0.6
113,025 + +2.1
113,046 - +0.9
113,055 - +0.8
113,075 + +0.7
113,075 - +0.0
113,077 + -0.2
113,153 + -0.7
113,218 + -1.2
113,313 - 12777 mRNA_4409 0.11 -0.3
113,567 + 12777 mRNA_4409 0.26 +0.5
113,567 + 12777 mRNA_4409 0.26 -0.2

Or see this region's nucleotide sequence