Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4437

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12804 and 12805 are separated by 236 nucleotides12805 and 12806 are separated by 523 nucleotides mRNA_4436: 12804 - Hypothetical Protein, at 178,306 to 178,939 12804 mRNA_4437: 12805 - KOG4629 Predicted mechanosensitive ion channel, at 179,176 to 181,994 12805 mRNA_4438: 12806 - Hypothetical Protein, at 182,518 to 183,149 12806

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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178,180 - -1.3
178,275 + +0.8
178,278 - -1.1
178,309 - +0.8
178,315 - +0.3
178,320 - +2.0
178,320 - -2.3
178,322 + -1.2
178,324 + +0.1
178,335 + -0.1
178,341 + +1.1
178,347 + +2.5
178,358 - -0.8
178,381 - 12804 mRNA_4436 0.12 +0.9
178,385 - 12804 mRNA_4436 0.12 -2.0
178,488 + 12804 mRNA_4436 0.29 +0.2
178,622 - 12804 mRNA_4436 0.50 +0.5
178,627 + 12804 mRNA_4436 0.51 -1.5
178,736 + 12804 mRNA_4436 0.68 +1.2
178,820 + 12804 mRNA_4436 0.81 +0.3
178,867 + 12804 mRNA_4436 0.88 +0.1
178,884 + -0.7
178,885 - -0.8
178,939 - +0.7
179,029 - +1.5
179,032 - -0.5
179,033 + -0.5
179,039 + +0.9
179,039 + +1.0
179,078 - +0.1
179,226 - -0.3
179,233 + +1.9
179,255 + -1.1
179,707 - 12805 mRNA_4437 0.19 +0.0
179,793 + 12805 mRNA_4437 0.22 -2.0
179,910 + 12805 mRNA_4437 0.26 +1.9
179,959 + 12805 mRNA_4437 0.28 +0.9
179,988 - 12805 mRNA_4437 0.29 +2.1
180,064 + 12805 mRNA_4437 0.32 -1.3
180,107 + 12805 mRNA_4437 0.33 +1.2
180,210 - 12805 mRNA_4437 0.37 -1.4
180,480 - 12805 mRNA_4437 0.46 +0.5
180,542 - 12805 mRNA_4437 0.48 -0.9
180,553 - 12805 mRNA_4437 0.49 -0.3
180,673 - 12805 mRNA_4437 0.53 -0.9
180,922 - 12805 mRNA_4437 0.62 -1.2
181,265 + 12805 mRNA_4437 0.74 +0.1
181,306 - 12805 mRNA_4437 0.76 +1.0
181,412 + 12805 mRNA_4437 0.79 -1.5
181,660 - 12805 mRNA_4437 0.88 +1.7
182,260 + +0.6
182,277 + -0.8
182,427 - +0.7
182,439 - +0.8
182,459 + -1.2
182,492 + +0.6
182,519 + -0.7
182,534 + -0.4
182,594 + 12806 mRNA_4438 0.12 +0.3
182,610 + 12806 mRNA_4438 0.15 +1.4
182,754 + 12806 mRNA_4438 0.37 -0.1
182,770 - 12806 mRNA_4438 0.40 -0.6
182,892 + 12806 mRNA_4438 0.59 -0.5

Or see this region's nucleotide sequence