Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4456

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12823 and 12824 are separated by 120 nucleotides12824 and 12825 are separated by 681 nucleotides mRNA_4455: 12823 - K08489 STX16 syntaxin 16, at 226,736 to 228,552 12823 mRNA_4456: 12824 - BLAST C-x8-C-x5-C-x3-H type zinc finger protein [Nanniz..., at 228,673 to 230,476 12824 mRNA_4457: 12825 - K14709 SLC39A1_2_3, ZIP1_2_3 solute carrier family 39 (zinc transporter), member 1/2/3, at 231,158 to 232,825 12825

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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227,708 - 12823 mRNA_4455 0.53 -0.2
227,801 - 12823 mRNA_4455 0.59 -0.6
227,960 - 12823 mRNA_4455 0.67 -0.8
228,309 + 12823 mRNA_4455 0.87 -0.8
228,428 - +0.5
228,431 - +1.2
228,586 + +0.4
228,589 + +1.4
228,594 - +0.5
228,595 - +0.0
228,598 - -0.8
228,613 + -1.1
228,621 - -0.0
228,621 - -0.8
228,720 + +1.2
228,735 - +0.2
228,740 - +0.5
228,898 - 12824 mRNA_4456 0.12 +1.0
228,914 + 12824 mRNA_4456 0.13 +0.4
228,922 + 12824 mRNA_4456 0.14 -0.3
228,936 - 12824 mRNA_4456 0.15 +1.6
228,974 - 12824 mRNA_4456 0.17 -0.3
229,027 + 12824 mRNA_4456 0.20 +0.4
229,028 - 12824 mRNA_4456 0.20 +0.9
229,056 + 12824 mRNA_4456 0.21 +1.0
229,067 - 12824 mRNA_4456 0.22 +0.6
229,070 - 12824 mRNA_4456 0.22 -0.5
229,071 + 12824 mRNA_4456 0.22 +0.0
229,121 + 12824 mRNA_4456 0.25 +3.2
229,197 - 12824 mRNA_4456 0.29 +0.3
229,211 - 12824 mRNA_4456 0.30 -0.9
229,228 - 12824 mRNA_4456 0.31 -0.9
229,229 + 12824 mRNA_4456 0.31 +1.5
229,235 + 12824 mRNA_4456 0.31 +1.5
229,237 - 12824 mRNA_4456 0.31 -1.1
229,333 - 12824 mRNA_4456 0.37 +0.3
229,335 + 12824 mRNA_4456 0.37 +0.1
229,822 + 12824 mRNA_4456 0.64 +1.2
229,944 + 12824 mRNA_4456 0.70 -0.1
230,067 - 12824 mRNA_4456 0.77 +0.7
230,217 + 12824 mRNA_4456 0.86 -0.4
230,227 + 12824 mRNA_4456 0.86 +0.3
230,485 - +0.3
230,501 + +0.7
230,512 - +0.1
230,533 - -0.2
230,621 + +1.0
230,627 - +0.3
230,742 - -0.7
230,767 - -0.8
230,769 - +0.1
230,769 + +0.1
230,873 + +0.1
230,881 + -2.9
230,881 - -0.2
230,881 + -0.9
230,889 - +0.4
230,897 - +0.2
230,910 + -0.2
230,919 - -0.7
230,920 - -0.4
230,956 - +1.2
230,966 - -0.0
230,966 + +0.6
230,970 - +0.5
230,974 - -0.9
230,982 - +0.3
230,995 - -0.3
231,009 - -0.1
231,012 - +0.3
231,031 + +1.5
231,061 + -3.4
231,275 + +1.9
231,402 + 12825 mRNA_4457 0.15 +0.1

Or see this region's nucleotide sequence