Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4464

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12831 and 12832 are separated by 397 nucleotides mRNA_4463: 12831 - Hypothetical Protein, at 243,437 to 244,042 12831 mRNA_4464: 12832 - Hypothetical Protein, at 244,440 to 244,979 12832

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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243,520 - 12831 mRNA_4463 0.14 -1.0
243,541 - 12831 mRNA_4463 0.17 +0.2
243,592 - 12831 mRNA_4463 0.26 +0.7
243,633 - 12831 mRNA_4463 0.32 -1.7
243,677 - 12831 mRNA_4463 0.40 +0.4
243,683 + 12831 mRNA_4463 0.41 -1.9
243,689 - 12831 mRNA_4463 0.42 +0.1
243,708 - 12831 mRNA_4463 0.45 +0.0
243,710 - 12831 mRNA_4463 0.45 -1.0
243,744 - 12831 mRNA_4463 0.51 +2.0
243,830 + 12831 mRNA_4463 0.65 +0.2
243,834 - 12831 mRNA_4463 0.66 +0.0
243,835 - 12831 mRNA_4463 0.66 -1.2
243,847 - 12831 mRNA_4463 0.68 -0.4
243,915 + 12831 mRNA_4463 0.79 -0.3
243,928 + 12831 mRNA_4463 0.81 +1.2
243,964 + 12831 mRNA_4463 0.87 +0.8
243,975 - 12831 mRNA_4463 0.89 -0.2
243,991 + +1.2
244,008 + +0.4
244,030 + -0.8
244,031 + -0.5
244,039 + +0.4
244,039 + +0.6
244,049 - +0.4
244,059 + -0.1
244,062 + +2.2
244,113 - -0.3
244,118 + +0.1
244,134 + -0.2
244,195 - +1.1
244,420 + -1.5
244,427 + +0.1
244,435 + -0.3
244,449 + -0.7
244,459 - -0.4
244,504 - 12832 mRNA_4464 0.12 -1.1
244,757 - 12832 mRNA_4464 0.59 +1.1
244,937 + +0.2
245,026 - -0.4
245,054 - +0.1
245,126 - +0.7
245,176 + +0.7
245,234 - -0.8
245,322 - +0.5
245,432 + -3.0
245,442 - +1.8
245,462 - +0.6
245,545 + +1.2
245,733 - +0.8
245,740 - +0.6
245,756 - -1.3

Or see this region's nucleotide sequence