Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4480

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12847 and 12848 are separated by 496 nucleotides12848 and 12849 are separated by 199 nucleotides mRNA_4479: 12847 - K17290 HTATIP2 oxidoreductase, at 282,366 to 283,335 12847 mRNA_4480: 12848 - Hypothetical Protein, at 283,832 to 284,551 12848 mRNA_4481: 12849 - Hypothetical Protein, at 284,751 to 285,386 12849

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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282,839 - 12847 mRNA_4479 0.49 -0.1
283,250 + -0.3
283,553 + +2.3
283,559 - -1.8
283,565 + -0.7
283,567 + +0.1
283,582 - +0.4
283,585 + +1.1
283,694 + +1.0
283,717 - +0.6
283,720 - -1.3
283,739 + +1.4
283,742 - -0.2
283,868 - +0.6
283,871 + -0.5
283,875 + +0.2
284,019 + 12848 mRNA_4480 0.26 +2.7
284,036 - 12848 mRNA_4480 0.28 -0.3
284,060 + 12848 mRNA_4480 0.32 +0.2
284,061 + 12848 mRNA_4480 0.32 -0.3
284,170 + 12848 mRNA_4480 0.47 +0.6
284,181 + 12848 mRNA_4480 0.48 +0.8
284,187 - 12848 mRNA_4480 0.49 -0.3
284,197 + 12848 mRNA_4480 0.51 +2.1
284,208 - 12848 mRNA_4480 0.52 -2.5
284,215 - 12848 mRNA_4480 0.53 +0.7
284,254 - 12848 mRNA_4480 0.59 +0.1
284,269 + 12848 mRNA_4480 0.61 -0.9
284,291 + 12848 mRNA_4480 0.64 -0.2
284,300 + 12848 mRNA_4480 0.65 +0.3
284,301 + 12848 mRNA_4480 0.65 -0.2
284,320 + 12848 mRNA_4480 0.68 +0.3
284,324 - 12848 mRNA_4480 0.68 +0.5
284,339 + 12848 mRNA_4480 0.70 -0.7
284,386 + 12848 mRNA_4480 0.77 +1.4
284,393 + 12848 mRNA_4480 0.78 -2.3
284,445 - 12848 mRNA_4480 0.85 +0.1
284,482 + +0.4
284,503 + +0.3
284,516 + -0.4
284,517 - +2.0
284,540 + +0.2
284,540 + -0.1
284,551 - -0.7
284,561 + -1.0
284,561 + +0.2
284,562 + +0.6
284,570 + +0.8
284,572 + +0.4
284,579 - +0.5
284,580 + -2.0
284,583 + +1.1
284,607 + -0.5
284,626 + -0.3
284,763 - -0.6
284,768 - -0.5
284,778 - +1.7
284,785 + -0.0
284,905 - 12849 mRNA_4481 0.24 +0.8
284,928 + 12849 mRNA_4481 0.28 +1.6
285,151 - 12849 mRNA_4481 0.63 -0.1
285,196 + 12849 mRNA_4481 0.70 -1.8
285,210 - 12849 mRNA_4481 0.72 +1.5
285,244 + 12849 mRNA_4481 0.78 -0.0

Or see this region's nucleotide sequence