Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4483

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12850 and 12851 are separated by 107 nucleotides12851 and 12852 are separated by 153 nucleotides mRNA_4482: 12850 - K03144 TFIIH4, GTF2H4, TFB2 transcription initiation factor TFIIH subunit 4, at 285,702 to 287,837 12850 mRNA_4483: 12851 - SUPERFAMILY--SSF53098, at 287,945 to 289,726 12851 mRNA_4484: 12852 - KOG2588 Predicted DNA-binding protein, at 289,880 to 293,833 12852

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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287,674 - -1.2
287,837 + +1.6
287,922 + -0.3
287,943 + -0.7
287,977 - -1.7
287,985 - -0.8
288,000 - -0.3
289,635 - -0.3
289,729 - -0.2
289,731 - +0.4
289,749 + +0.9
289,749 + -1.2
290,496 - 12852 mRNA_4484 0.16 -0.2
290,556 + 12852 mRNA_4484 0.17 +0.5
290,577 + 12852 mRNA_4484 0.18 +0.9
290,625 - 12852 mRNA_4484 0.19 +0.3

Or see this region's nucleotide sequence