Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4489

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12856 and 12857 are separated by 215 nucleotides12857 and 12858 are separated by 436 nucleotides mRNA_4488: 12856 - BLAST phospholipase C [Moesziomyces antarcticus T-34], at 301,518 to 302,496 12856 mRNA_4489: 12857 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 302,712 to 304,024 12857 mRNA_4490: 12858 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 304,461 to 305,865 12858

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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302,582 - +2.2
302,596 - -0.9
302,620 + +1.3
302,643 + +0.8
302,762 + +0.5
302,764 - -0.0
302,884 + 12857 mRNA_4489 0.13 -0.3
303,064 - 12857 mRNA_4489 0.27 +0.3
303,201 - 12857 mRNA_4489 0.37 +1.1
303,480 - 12857 mRNA_4489 0.58 +0.4
303,490 - 12857 mRNA_4489 0.59 -1.1
303,781 - 12857 mRNA_4489 0.81 -2.6
303,796 + 12857 mRNA_4489 0.83 -0.0
303,924 - +1.6
303,937 - -0.2
304,081 - -0.3
304,083 + +1.3
304,112 + -0.3
304,112 + +0.1
304,122 + -2.6
304,123 - +0.0
304,174 - -0.4
304,196 - +0.0
304,234 + +2.6
304,271 + +0.8
304,316 - -0.4
304,338 + -0.9
304,668 - 12858 mRNA_4490 0.15 -1.6
304,947 + 12858 mRNA_4490 0.35 -0.3

Or see this region's nucleotide sequence