Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4497

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12865 and 12866 are separated by 542 nucleotides mRNA_4497: 12865 - SUPERFAMILY--SSF81383, at 320,556 to 322,046 12865 mRNA_4498: 12866 - Hypothetical Protein, at 322,589 to 323,741 12866

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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319,751 + +2.0
319,773 + +0.4
319,775 - -0.2
320,103 + +1.3
320,123 - +2.6
320,124 + +0.5
320,124 + -2.8
320,127 - -2.1
320,297 - +1.1
320,384 - -1.8
320,390 + +0.2
320,410 - +1.2
320,549 - +0.3
320,661 + +0.8
320,874 + 12865 mRNA_4497 0.21 -0.3
320,974 - 12865 mRNA_4497 0.28 +0.4
320,978 + 12865 mRNA_4497 0.28 -0.3
321,120 - 12865 mRNA_4497 0.38 +1.4
321,180 - 12865 mRNA_4497 0.42 -0.8
321,182 - 12865 mRNA_4497 0.42 +0.2
321,250 + 12865 mRNA_4497 0.47 +0.9
321,326 - 12865 mRNA_4497 0.52 +1.5
321,447 - 12865 mRNA_4497 0.60 +0.0
321,590 - 12865 mRNA_4497 0.69 +1.7
321,880 + 12865 mRNA_4497 0.89 +3.1
321,914 - +1.2
322,028 - -0.5
322,035 - -1.7
322,050 + +1.3
322,103 - -1.1
322,123 + -0.0
322,423 - +1.1
322,674 + -0.9

Or see this region's nucleotide sequence