Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4525

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12892 and 12893 are separated by 460 nucleotides12893 and 12894 are separated by 256 nucleotides mRNA_4524: 12892 - Hypothetical Protein, at 379,640 to 380,547 12892 mRNA_4525: 12893 - KOG0143 Iron/ascorbate family oxidoreductases, at 381,008 to 382,487 12893 mRNA_4526: 12894 - K12446 E2.7.1.46 L-arabinokinase, at 382,744 to 384,550 12894

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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380,089 + 12892 mRNA_4524 0.49 +2.0
380,187 + 12892 mRNA_4524 0.60 -0.5
380,633 - +1.0
380,733 + +2.0
381,808 - 12893 mRNA_4525 0.54 -1.7
381,812 + 12893 mRNA_4525 0.54 -1.1
382,086 + 12893 mRNA_4525 0.73 +1.5
382,112 + 12893 mRNA_4525 0.75 -1.7
382,142 - 12893 mRNA_4525 0.77 -3.0
382,244 - 12893 mRNA_4525 0.84 -0.0
382,259 + 12893 mRNA_4525 0.85 +2.1
382,285 - 12893 mRNA_4525 0.86 +2.0
382,291 - 12893 mRNA_4525 0.87 +2.5
382,291 - 12893 mRNA_4525 0.87 -1.4
382,298 + 12893 mRNA_4525 0.87 -0.9
382,400 + -0.1
382,405 + -0.6
382,518 - -0.6
382,676 - -0.3
382,684 + -0.2
382,807 - -0.0
382,828 - +0.7
382,934 + 12894 mRNA_4526 0.11 -0.6
382,979 + 12894 mRNA_4526 0.13 +0.5
383,104 + 12894 mRNA_4526 0.20 -0.5
383,233 - 12894 mRNA_4526 0.27 +0.9

Or see this region's nucleotide sequence