Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4543

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12910 and 12911 are separated by 248 nucleotides12911 and 12912 are separated by 986 nucleotides mRNA_4542: 12910 - K05302 SETD6 N-lysine methyltransferase SETD6, at 420,750 to 422,529 12910 mRNA_4543: 12911 - HMMPfam-Rrp15p-PF07890, at 422,778 to 423,805 12911 mRNA_4544: 12912 - K01251 E3.3.1.1, ahcY adenosylhomocysteinase, at 424,792 to 427,173 12912

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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422,039 + 12910 mRNA_4542 0.72 +1.9
422,313 - 12910 mRNA_4542 0.88 +1.2
422,375 - +0.2
422,384 - +0.6
422,526 - +1.0
422,609 + -0.6
422,660 + +1.6
422,661 - -0.6
422,662 + -2.4
422,669 - -1.3
422,675 + -0.4
424,017 + +0.5
424,319 - +0.3
424,439 - -1.1
424,447 + +1.1
424,452 + +0.3
424,541 - +1.5
424,572 - -0.9
424,574 - +0.9
424,595 + -0.8
424,600 - +1.1
424,602 - +1.8
424,626 - +0.7

Or see this region's nucleotide sequence