Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4574

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12941 and 12942 are separated by 54 nucleotides12942 and 12943 are separated by 271 nucleotides mRNA_4573: 12941 - K03142 TFIIH2, GTF2H2, SSL1 transcription initiation factor TFIIH subunit 2, at 497,233 to 498,989 12941 mRNA_4574: 12942 - K12184 VPS28 ESCRT-I complex subunit VPS28, at 499,044 to 500,144 12942 mRNA_4575: 12943 - HMMPfam-ICE2-PF08426, at 500,416 to 502,164 12943

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
499,080 - -0.0
499,794 - 12942 mRNA_4574 0.68 -1.1
499,815 - 12942 mRNA_4574 0.70 -0.3
500,103 - -1.2
500,248 - -1.8
500,397 - -0.6
500,400 + -0.4
500,402 + +0.0
500,455 + +2.6
500,541 + -0.0
500,695 - 12943 mRNA_4575 0.16 +0.1
500,866 + 12943 mRNA_4575 0.26 -0.6

Or see this region's nucleotide sequence