Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4588

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12955 and 12956 are separated by 902 nucleotides12956 and 12957 are separated by 268 nucleotides mRNA_4587: 12955 - HMMPfam-Complex1_LYR-like-PF13232, at 531,133 to 531,604 12955 mRNA_4588: 12956 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 532,507 to 535,207 12956 mRNA_4589: 12957 - K14795 RRP36 ribosomal RNA-processing protein 36, at 535,476 to 536,079 12957

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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531,509 - 12955 mRNA_4587 0.80 -0.2
531,529 - 12955 mRNA_4587 0.84 +1.2
531,678 + +0.7
531,821 + -0.3
532,566 - +1.7
533,005 + 12956 mRNA_4588 0.18 -2.1
533,005 - 12956 mRNA_4588 0.18 -2.4
533,835 - 12956 mRNA_4588 0.49 -0.8
533,854 - 12956 mRNA_4588 0.50 +0.5
533,977 - 12956 mRNA_4588 0.54 -0.2
534,181 + 12956 mRNA_4588 0.62 +0.5
534,288 + 12956 mRNA_4588 0.66 +3.2
534,734 + 12956 mRNA_4588 0.82 -0.9
534,875 + 12956 mRNA_4588 0.88 -2.3

Or see this region's nucleotide sequence