Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4629

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12996 and 12997 are separated by 947 nucleotides mRNA_4628: 12996 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 639,260 to 641,629 12996 mRNA_4629: 12997 - K11971 RNF14, ARA54 E3 ubiquitin-protein ligase RNF14, at 642,577 to 644,729 12997

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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641,651 - -1.0
641,744 - +0.8
642,048 - +0.8
642,138 + +0.8
642,353 - -0.2
642,625 + -0.3
643,223 - 12997 mRNA_4629 0.30 +0.1
643,349 - 12997 mRNA_4629 0.36 -0.0
643,361 + 12997 mRNA_4629 0.36 -0.0
643,367 - 12997 mRNA_4629 0.37 +0.1
643,492 - 12997 mRNA_4629 0.42 +1.2
644,352 - 12997 mRNA_4629 0.82 -0.3
644,513 + 12997 mRNA_4629 0.90 +0.4
644,654 - +0.0
644,655 - +1.2
644,671 - +0.4
644,675 - +0.2
644,675 - +0.9
644,676 + +0.3
644,800 - -1.7
644,825 - -0.6
644,833 - -1.1
644,879 + +1.9
644,949 - +0.7
645,710 - +1.1

Or see this region's nucleotide sequence