Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4634

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13002 and 13003 are separated by 237 nucleotides mRNA_4634: 13002 - K00873 PK, pyk pyruvate kinase, at 656,790 to 659,276 13002 mRNA_4635: 13003 - Hypothetical Protein, at 659,514 to 660,743 13003

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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655,806 - -1.5
655,808 + -0.0
655,809 - +0.8
655,812 + -2.3
655,819 - +0.3
655,830 - +0.8
655,831 + -1.2
655,963 + +1.1
656,091 + +0.1
656,107 + +1.7
656,245 + +0.5
656,256 + +2.0
656,382 - -0.4
656,391 + +0.6
656,392 - +0.9
656,393 - -1.0
656,397 + +0.4
656,401 - -2.3
656,407 - +0.7
656,542 - -0.8
656,658 - -1.2
656,673 - -0.3
656,676 - +1.0
656,679 + -0.1
656,686 + -0.4
656,687 - -0.4
656,693 - +0.2
656,694 + -0.2
656,694 - -1.2
656,698 - -0.1
656,699 - -0.8
656,706 - +0.5
656,708 - +0.2
656,709 - -1.0
656,710 + -1.0
656,711 + -0.3
656,715 + +2.2
656,730 - -0.9
656,736 + +0.8
656,751 + +0.1
659,544 + +1.8
659,958 + 13003 mRNA_4635 0.36 +1.1
659,990 + 13003 mRNA_4635 0.39 +0.5
660,247 - 13003 mRNA_4635 0.60 +0.2

Or see this region's nucleotide sequence