Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4680

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13047 and 13048 are separated by 212 nucleotides mRNA_4679: 13047 - Hypothetical Protein, at 755,257 to 756,395 13047 mRNA_4680: 13048 - K01067 E3.1.2.1, ACH1 acetyl-CoA hydrolase, at 756,608 to 758,345 13048

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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755,753 - 13047 mRNA_4679 0.44 -0.3
755,910 - 13047 mRNA_4679 0.57 -0.3
756,191 + 13047 mRNA_4679 0.82 +0.5
756,191 + 13047 mRNA_4679 0.82 +0.4
756,223 - 13047 mRNA_4679 0.85 +0.7
757,254 + 13048 mRNA_4680 0.37 -1.5
757,374 - 13048 mRNA_4680 0.44 +0.9
757,412 + 13048 mRNA_4680 0.46 +0.7
757,537 - 13048 mRNA_4680 0.53 -0.4
758,719 - -0.7
758,725 + -1.2
758,726 - +0.4
758,728 + -0.3
758,744 + -2.1
758,891 + +1.5
759,001 + +0.9
759,003 - -1.2
759,015 + +0.5
759,027 - -0.4
759,029 - +0.0
759,031 - -0.8
759,158 - -0.9
759,166 + +0.0
759,185 + -1.2
759,214 - -1.0
759,292 - -1.1
759,299 - -0.4
759,335 - +0.2
759,340 - +2.1
759,343 + +1.6

Or see this region's nucleotide sequence