Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4726

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13093 and 13094 are separated by 392 nucleotides13094 and 13095 are separated by 279 nucleotides mRNA_4725: 13093 - Hypothetical Protein, at 865,355 to 866,563 13093 mRNA_4726: 13094 - KOG3214 Uncharacterized Zn ribbon-containing protein, at 866,956 to 867,873 13094 mRNA_4727: 13095 - Hypothetical Protein, at 868,153 to 868,831 13095

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
865,974 - 13093 mRNA_4725 0.51 -1.8
865,984 + 13093 mRNA_4725 0.52 -0.6
866,002 + 13093 mRNA_4725 0.54 -1.4
866,142 + 13093 mRNA_4725 0.65 +0.7
866,576 + +1.5
866,711 + -0.8
866,721 - -0.6
866,733 - -0.3
866,844 - +1.1
866,846 - +0.1
866,854 + -0.5
866,870 + -0.6
866,876 + +1.7
866,877 + -0.2
867,012 - +1.0
867,027 + +1.0
867,092 - 13094 mRNA_4726 0.15 +0.6
867,148 - 13094 mRNA_4726 0.21 +0.9
867,150 - 13094 mRNA_4726 0.21 +2.7
867,156 + 13094 mRNA_4726 0.22 -0.4
867,434 + 13094 mRNA_4726 0.52 +0.2
867,445 - 13094 mRNA_4726 0.53 -0.8
867,448 + 13094 mRNA_4726 0.54 -0.3
867,468 + 13094 mRNA_4726 0.56 +1.0
867,554 - 13094 mRNA_4726 0.65 +0.0
867,867 - -0.3
867,880 - +0.7
867,923 - -0.4
868,012 - -0.2
868,303 + 13095 mRNA_4727 0.22 -1.9
868,448 + 13095 mRNA_4727 0.43 +0.7
868,595 + 13095 mRNA_4727 0.65 -0.2
868,598 + 13095 mRNA_4727 0.66 +0.1
868,608 - 13095 mRNA_4727 0.67 +0.4
868,615 - 13095 mRNA_4727 0.68 -0.2
868,719 - 13095 mRNA_4727 0.83 +0.7
868,727 - 13095 mRNA_4727 0.85 +0.8
868,799 + +0.7
868,864 - +2.2
868,873 - -0.4

Or see this region's nucleotide sequence