Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4749

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13116 and 13117 are separated by 308 nucleotides13117 and 13118 are separated by 296 nucleotides mRNA_4748: 13116 - Hypothetical Protein, at 915,599 to 917,193 13116 mRNA_4749: 13117 - SUPERFAMILY--SSF52047, at 917,502 to 919,114 13117 mRNA_4750: 13118 - Hypothetical Protein, at 919,411 to 921,092 13118

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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916,516 - 13116 mRNA_4748 0.57 -0.4
916,672 + 13116 mRNA_4748 0.67 -0.3
916,674 + 13116 mRNA_4748 0.67 +0.9
916,712 + 13116 mRNA_4748 0.70 -1.0
916,904 - 13116 mRNA_4748 0.82 -0.9
916,982 + 13116 mRNA_4748 0.87 -0.3
916,993 + 13116 mRNA_4748 0.87 -0.8
917,004 - 13116 mRNA_4748 0.88 +0.0
917,053 + +0.2
917,057 + +0.4
917,091 - +0.3
917,373 - +0.2
917,534 - +0.1
917,551 + +0.2
917,563 + -1.4
917,675 - 13117 mRNA_4749 0.11 -1.3
917,693 - 13117 mRNA_4749 0.12 +0.6
917,707 + 13117 mRNA_4749 0.13 +0.9
917,714 - 13117 mRNA_4749 0.13 +0.2
918,280 + 13117 mRNA_4749 0.48 -1.5
918,412 - 13117 mRNA_4749 0.56 -1.4
918,704 - 13117 mRNA_4749 0.75 -0.4
918,823 - 13117 mRNA_4749 0.82 -0.3
918,858 + 13117 mRNA_4749 0.84 +1.5
918,899 - 13117 mRNA_4749 0.87 +0.4
919,121 + +0.5
919,141 - -0.1
919,155 + -0.6
919,330 + +1.1
919,335 - +0.7
919,451 - +1.3
919,462 + -0.6
919,468 - +0.1
919,471 + -0.6
919,581 + 13118 mRNA_4750 0.10 -0.7
919,870 - 13118 mRNA_4750 0.27 -1.7
919,871 - 13118 mRNA_4750 0.27 -0.0

Or see this region's nucleotide sequence