Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4763

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13130 and 13131 are separated by 709 nucleotides mRNA_4762: 13130 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 946,790 to 947,960 13130 mRNA_4763: 13131 - KOG1263 Multicopper oxidases, at 948,670 to 952,404 13131

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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947,679 - 13130 mRNA_4762 0.76 +0.5
947,858 + +1.4
948,115 - -0.9
948,136 - -0.4
948,187 + +0.6
948,188 + +2.5
948,292 - -0.1
948,426 - +0.7
948,458 + -1.0
948,584 + -0.7
949,019 - -0.3
949,290 - 13131 mRNA_4763 0.17 +0.9
949,518 + 13131 mRNA_4763 0.23 -1.1
949,617 + 13131 mRNA_4763 0.25 -0.4
950,490 - 13131 mRNA_4763 0.49 +1.8
950,610 - 13131 mRNA_4763 0.52 -1.1
950,879 + 13131 mRNA_4763 0.59 +0.5
951,217 - 13131 mRNA_4763 0.68 +0.0
951,286 + 13131 mRNA_4763 0.70 +0.1
951,486 - 13131 mRNA_4763 0.75 -1.5
951,622 + 13131 mRNA_4763 0.79 +0.0
951,668 - 13131 mRNA_4763 0.80 +1.8
951,778 - 13131 mRNA_4763 0.83 +0.8
951,778 - 13131 mRNA_4763 0.83 -0.3
951,787 + 13131 mRNA_4763 0.83 +1.0
951,787 + 13131 mRNA_4763 0.83 +0.1
951,789 - 13131 mRNA_4763 0.84 -0.2
951,869 - 13131 mRNA_4763 0.86 -0.7
952,179 + +1.3
952,321 - -0.2
952,349 + -0.9
952,610 - -1.9
952,796 + +0.5
952,805 + +2.1
952,806 - -2.2
952,932 + +1.7
952,932 + -1.5
953,090 + +0.1
953,094 + +0.6
953,117 - -0.6
953,225 + +0.1
953,358 + -1.7
953,360 + +0.0
953,366 + +2.1
953,402 + -0.1

Or see this region's nucleotide sequence