Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4780

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13147 and 13148 are separated by 347 nucleotides13148 and 13149 are separated by 384 nucleotides13149 and 13150 are separated by 20 nucleotides mRNA_4779: 13147 - Hypothetical Protein, at 995,491 to 996,923 13147 mRNA_4780: 13148 - SUPERFAMILY--SSF52047, at 997,271 to 1,001,046 13148 mRNA_4781: 13149 - Hypothetical Protein, at 1,001,431 to 1,001,991 13149 mRNA_4782: 13150 - Hypothetical Protein, at 1,002,012 to 1,003,066 13150

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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996,921 + -0.1
997,187 + -0.7
997,516 + +1.1
997,828 - 13148 mRNA_4780 0.15 +2.0
998,056 - 13148 mRNA_4780 0.21 +0.1
998,207 + 13148 mRNA_4780 0.25 +0.2
998,213 + 13148 mRNA_4780 0.25 -0.5
998,622 - 13148 mRNA_4780 0.36 -0.8
998,648 - 13148 mRNA_4780 0.36 +0.6
998,660 - 13148 mRNA_4780 0.37 -0.4
998,661 - 13148 mRNA_4780 0.37 +0.3
998,666 - 13148 mRNA_4780 0.37 +0.4
998,796 + 13148 mRNA_4780 0.40 -0.4
998,797 + 13148 mRNA_4780 0.40 +0.1
998,813 - 13148 mRNA_4780 0.41 +0.3
998,819 - 13148 mRNA_4780 0.41 +0.9
999,102 + 13148 mRNA_4780 0.48 -0.1
999,238 - 13148 mRNA_4780 0.52 +0.1
999,404 - 13148 mRNA_4780 0.56 +0.3
999,678 - 13148 mRNA_4780 0.64 -1.4
999,734 - 13148 mRNA_4780 0.65 +0.4
999,866 - 13148 mRNA_4780 0.69 -2.3
999,867 + 13148 mRNA_4780 0.69 -0.7
999,992 + 13148 mRNA_4780 0.72 -0.7
1,000,048 + 13148 mRNA_4780 0.74 -0.8
1,000,146 + 13148 mRNA_4780 0.76 +1.0
1,000,443 + 13148 mRNA_4780 0.84 +0.4
1,000,570 + 13148 mRNA_4780 0.87 +0.1
1,000,628 - 13148 mRNA_4780 0.89 -2.0
1,000,682 + +0.9
1,000,700 - +0.4
1,000,735 + -0.6
1,000,871 - -0.8
1,000,887 + -2.6
1,000,936 + +0.9
1,000,948 - +1.2
1,000,993 - +0.7
1,001,019 - +0.2
1,001,021 - -1.1
1,001,028 + +0.5
1,001,057 - +0.1
1,001,059 + -0.1
1,001,099 + -1.0
1,001,175 + +2.2
1,001,214 - +0.9
1,001,218 - +1.2
1,001,225 - -0.2
1,001,351 + -0.4
1,001,360 - +1.5
1,001,366 - +0.8
1,001,366 - -0.1
1,001,367 - -0.4
1,001,383 - -0.2

Or see this region's nucleotide sequence