Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4807

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13174 and 13175 are separated by 326 nucleotides13175 and 13176 are separated by 756 nucleotides mRNA_4806: 13174 - Hypothetical Protein, at 1,057,204 to 1,058,778 13174 mRNA_4807: 13175 - K03119 tauD taurine dioxygenase, at 1,059,105 to 1,060,772 13175 mRNA_4808: 13176 - K12880 THOC3 THO complex subunit 3, at 1,061,529 to 1,063,050 13176

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,058,221 + 13174 mRNA_4806 0.65 -0.3
1,058,237 - 13174 mRNA_4806 0.66 +0.8
1,058,663 - +0.8
1,058,866 - +0.7
1,058,996 - -0.3
1,060,002 - 13175 mRNA_4807 0.54 +0.1
1,060,014 + 13175 mRNA_4807 0.54 +2.7
1,060,018 + 13175 mRNA_4807 0.55 -0.7
1,060,026 - 13175 mRNA_4807 0.55 +0.6
1,060,310 + 13175 mRNA_4807 0.72 +0.4
1,060,601 + 13175 mRNA_4807 0.90 -0.5
1,060,611 - +0.5
1,061,035 + -0.4
1,061,044 + -0.7
1,061,122 + -0.5
1,061,132 - -0.8
1,061,175 - -1.8
1,061,181 - +1.7
1,061,195 + +1.1
1,061,207 + +0.2
1,061,289 - -1.7
1,061,315 + -0.2
1,061,336 + +0.8
1,061,612 + +0.3

Or see this region's nucleotide sequence