Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4813

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13180 and 13181 are separated by 363 nucleotides13181 and 13182 are separated by 230 nucleotides mRNA_4812: 13180 - K15255 PIF1 ATP-dependent DNA helicase PIF1, at 1,072,334 to 1,073,346 13180 mRNA_4813: 13181 - Hypothetical Protein, at 1,073,710 to 1,074,508 13181 mRNA_4814: 13182 - HMMPfam-SnoaL-like domain-PF13577,SUPERFAMILY--SSF54427, at 1,074,739 to 1,075,935 13182

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,072,747 + 13180 mRNA_4812 0.41 -1.0
1,073,143 + 13180 mRNA_4812 0.80 +0.0
1,073,150 + 13180 mRNA_4812 0.81 -1.2
1,073,153 - 13180 mRNA_4812 0.81 +0.2
1,073,344 - -2.2
1,073,406 - -0.2
1,073,432 + -0.9
1,073,461 + +0.4
1,073,943 + 13181 mRNA_4813 0.29 -0.8
1,074,173 - 13181 mRNA_4813 0.58 +1.1
1,074,627 - +2.1
1,074,776 - -0.5
1,074,776 - -0.5
1,074,790 + +0.3
1,074,793 - +0.3
1,074,929 - 13182 mRNA_4814 0.16 -0.6
1,074,948 - 13182 mRNA_4814 0.17 -0.2
1,074,993 - 13182 mRNA_4814 0.21 +0.8
1,075,091 - 13182 mRNA_4814 0.29 -1.3
1,075,115 - 13182 mRNA_4814 0.31 +2.0
1,075,118 + 13182 mRNA_4814 0.32 +1.0
1,075,350 + 13182 mRNA_4814 0.51 -0.7

Or see this region's nucleotide sequence