Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4821

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13188 and 13189 are separated by 327 nucleotides13189 and 13190 are separated by 667 nucleotides mRNA_4820: 13188 - Hypothetical Protein, at 1,088,296 to 1,089,046 13188 mRNA_4821: 13189 - HMMPfam-Arylsulfotransferase (ASST)-PF14269, at 1,089,374 to 1,091,580 13189 mRNA_4822: 13190 - K13800 CMPK1, UMPK UMP-CMP kinase, at 1,092,248 to 1,093,445 13190

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,088,540 + 13188 mRNA_4820 0.32 +0.1
1,088,549 - 13188 mRNA_4820 0.34 +1.4
1,088,559 + 13188 mRNA_4820 0.35 -0.1
1,088,719 - 13188 mRNA_4820 0.56 -0.3
1,088,842 + 13188 mRNA_4820 0.73 +0.9
1,088,880 + 13188 mRNA_4820 0.78 +1.0
1,089,006 + -0.3
1,089,023 - -0.4
1,089,568 - +0.1
1,089,774 - 13189 mRNA_4821 0.18 -2.0
1,089,884 - 13189 mRNA_4821 0.23 -1.7
1,090,463 + 13189 mRNA_4821 0.49 -1.4
1,090,655 + 13189 mRNA_4821 0.58 +1.4
1,090,690 - 13189 mRNA_4821 0.60 -0.7
1,090,738 - 13189 mRNA_4821 0.62 -1.1
1,091,315 + 13189 mRNA_4821 0.88 +2.1
1,091,324 + 13189 mRNA_4821 0.88 +1.5
1,091,471 + +1.2
1,091,493 + -0.0
1,091,496 + +1.0
1,091,506 - -0.9
1,091,514 + -0.9
1,091,598 - -0.8
1,091,612 - -2.8
1,091,631 - -0.5
1,091,632 + +0.7
1,091,656 + -0.1
1,091,759 - +0.1
1,091,771 - +0.8
1,091,797 + +0.9
1,091,800 + -1.1
1,091,803 - +2.0
1,091,941 + -0.7
1,092,233 - -0.3

Or see this region's nucleotide sequence