Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4877

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13244 and 13245 are separated by 543 nucleotides mRNA_4876: 13244 - K20133 USP6NL USP6 N-terminal-like protein, at 1,198,224 to 1,200,676 13244 mRNA_4877: 13245 - KOG2533 Permease of the major facilitator superfamily, at 1,201,220 to 1,203,456 13245

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,200,285 + 13244 mRNA_4876 0.84 +0.4
1,200,420 - 13244 mRNA_4876 0.90 +1.5
1,200,546 + +0.0
1,200,554 + -1.2
1,200,566 + +0.3
1,200,716 - +2.6
1,200,873 - +0.8
1,201,006 + +1.0
1,201,010 + -0.6
1,201,204 + -0.1
1,202,182 + 13245 mRNA_4877 0.43 -1.8
1,202,205 + 13245 mRNA_4877 0.44 +1.4
1,202,918 + 13245 mRNA_4877 0.76 +0.9
1,203,164 - 13245 mRNA_4877 0.87 -0.3
1,203,180 - 13245 mRNA_4877 0.88 -0.9
1,203,489 + +0.6
1,203,548 + -0.0
1,203,639 + +1.7
1,203,772 - +0.1
1,203,784 + -0.7
1,203,795 - -0.9
1,203,797 + +0.2
1,203,798 + +0.3
1,203,809 + -0.8
1,203,810 - -2.0
1,203,821 + +0.0
1,203,821 + +0.3
1,203,842 + +0.2
1,203,842 + -0.2
1,203,846 + +0.6
1,203,847 - +1.4
1,203,848 - +0.3
1,203,849 + -0.7
1,203,860 + +0.0
1,203,863 - +0.8
1,203,864 - -0.7
1,203,869 + +0.3
1,203,870 + +0.4
1,203,875 + +1.3
1,203,892 + +0.4
1,203,893 - +0.5
1,203,899 + -0.4
1,203,915 - +0.1
1,203,919 + -1.4
1,203,938 + +1.0
1,203,943 - -0.3
1,203,949 + +0.7
1,203,949 + +1.2
1,203,952 + +0.5
1,203,956 - -0.3
1,203,956 + +0.0
1,203,983 + -0.2
1,203,996 + -0.1
1,204,001 + +0.6
1,204,084 + -1.5
1,204,110 - +0.7
1,204,134 - -1.3
1,204,323 - +1.7
1,204,328 - +0.0
1,204,336 - +0.1
1,204,352 + -0.6
1,204,397 + +0.4
1,204,427 - +0.0
1,204,435 + +1.2

Or see this region's nucleotide sequence