Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4886

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13253 and 13254 are separated by 249 nucleotides13254 and 13255 are separated by 155 nucleotides mRNA_4885: 13253 - K03105 SRP19 signal recognition particle subunit SRP19, at 1,219,636 to 1,220,593 13253 mRNA_4886: 13254 - Hypothetical Protein, at 1,220,843 to 1,222,544 13254 mRNA_4887: 13255 - K11365 SGF73 SAGA-associated factor 73, at 1,222,700 to 1,223,919 13255

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,220,347 - 13253 mRNA_4885 0.74 -2.1
1,220,793 + +0.1
1,221,108 - 13254 mRNA_4886 0.16 -0.1
1,221,525 + 13254 mRNA_4886 0.40 +1.8
1,222,111 + 13254 mRNA_4886 0.75 +1.3
1,222,118 - 13254 mRNA_4886 0.75 +0.0
1,222,386 + -0.9
1,222,697 + +1.3
1,222,839 - 13255 mRNA_4887 0.11 +0.3
1,222,870 - 13255 mRNA_4887 0.14 +0.2
1,222,876 + 13255 mRNA_4887 0.14 +0.9
1,223,032 + 13255 mRNA_4887 0.27 -0.5
1,223,118 - 13255 mRNA_4887 0.34 +1.2
1,223,452 + 13255 mRNA_4887 0.62 +0.7

Or see this region's nucleotide sequence