Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4895

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13262 and 13263 are separated by 361 nucleotides mRNA_4894: 13262 - K11187 PRDX5 peroxiredoxin 5, atypical 2-Cys peroxiredoxin, at 1,240,475 to 1,241,393 13262 mRNA_4895: 13263 - HMMPfam-Etoposide-induced protein 2.4 (EI24)-PF07264, at 1,241,755 to 1,243,025 13263

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,240,794 + 13262 mRNA_4894 0.35 +0.0
1,241,074 + 13262 mRNA_4894 0.65 -0.9
1,241,177 - 13262 mRNA_4894 0.76 +1.3
1,241,198 + 13262 mRNA_4894 0.79 +0.0
1,241,222 + 13262 mRNA_4894 0.81 +0.7
1,241,226 + 13262 mRNA_4894 0.82 -0.8
1,241,226 + 13262 mRNA_4894 0.82 +0.2
1,241,238 - 13262 mRNA_4894 0.83 -1.2
1,241,244 - 13262 mRNA_4894 0.84 +0.5
1,241,372 - +1.7
1,241,378 - +1.5
1,241,379 + -0.7
1,241,491 - -2.3
1,241,498 + +0.6
1,241,505 - +0.7
1,241,507 + +0.0
1,241,512 - -0.5
1,241,516 + -1.4
1,241,520 + -0.1
1,241,522 - +1.2
1,241,525 + +0.2
1,241,526 - -1.1
1,241,527 - -2.4
1,241,527 - +2.0
1,241,529 + +1.0
1,241,529 + +1.7
1,241,531 - +0.7
1,241,533 + +0.9
1,241,533 + -0.4
1,241,535 - +0.5
1,241,639 - +3.1
1,241,645 + -0.7
1,241,645 - +0.5
1,241,646 - +2.2
1,241,657 - -1.1
1,241,660 + +2.2
1,241,661 - +0.8
1,241,673 - -0.3
1,241,674 + -0.3
1,241,693 - -0.8
1,241,724 + -0.5
1,241,822 - -0.6
1,241,825 - -0.7
1,241,826 + +1.3
1,241,879 + +0.2
1,241,995 - 13263 mRNA_4895 0.19 +2.4
1,242,091 - 13263 mRNA_4895 0.26 -0.6
1,242,263 - 13263 mRNA_4895 0.40 +0.6
1,242,844 + 13263 mRNA_4895 0.86 -0.7
1,242,859 + 13263 mRNA_4895 0.87 -1.0
1,242,995 + +0.9
1,243,574 - -0.2
1,243,865 - -1.1
1,243,876 - +0.2
1,243,881 - +1.3
1,243,882 - -0.2
1,243,883 + +1.6
1,243,885 + +0.2
1,243,897 - +0.2
1,243,908 - +0.2
1,243,911 + +0.5
1,243,919 + -0.2
1,243,922 + +1.5

Or see this region's nucleotide sequence