Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4954

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13321 and 13322 are separated by 553 nucleotides13322 and 13323 are separated by 748 nucleotides mRNA_4953: 13321 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF01243,SUPERFAMILY--SSF50475, at 1,389,640 to 1,390,956 13321 mRNA_4954: 13322 - Hypothetical Protein, at 1,391,510 to 1,392,423 13322 mRNA_4955: 13323 - K20306 TRAPPC9, TRS120 trafficking protein particle complex subunit 9, at 1,393,172 to 1,398,147 13323

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,390,704 + 13321 mRNA_4953 0.81 -0.0
1,391,075 - -0.8
1,391,145 - -0.5
1,391,149 - +0.8
1,391,151 - -0.1
1,391,157 - +2.2
1,391,158 - +0.3
1,391,164 + +2.1
1,391,169 + -2.3
1,391,203 + +2.0
1,391,267 - -0.1
1,391,276 - -0.6
1,391,285 + +0.8
1,391,291 + +0.6
1,391,291 - +0.5
1,391,304 - +0.2
1,391,310 + -0.5
1,391,313 + -0.2
1,391,314 + -0.5
1,391,332 - +1.2
1,391,334 - +0.4
1,391,334 + -0.5
1,391,335 - +1.2
1,391,335 + +0.4
1,391,336 - -0.1
1,391,343 + -0.0
1,391,344 + +0.3
1,391,368 - -0.8
1,391,385 + -0.4
1,391,395 + +0.3
1,391,399 + -0.5
1,391,401 - -0.3
1,391,405 - +0.6
1,391,414 + -0.1
1,391,414 - -2.8
1,391,414 + -0.4
1,391,416 + -0.5
1,391,420 - +1.7
1,391,426 + -0.0
1,391,429 + +1.5
1,391,430 - -1.1
1,391,431 + +0.2
1,391,432 - +0.6
1,391,432 - +0.2
1,391,437 - -2.3
1,391,442 + -0.1
1,391,452 + -2.7
1,391,452 + -0.0
1,391,452 + -1.2
1,391,454 - +0.1
1,391,457 - -0.2
1,391,458 - -1.2
1,391,467 + +0.0
1,391,472 + -0.1
1,391,493 - +0.2
1,391,511 - +0.4
1,391,515 + +0.1
1,391,545 + +1.8
1,391,588 + -0.8
1,391,596 + -1.1
1,391,609 - 13322 mRNA_4954 0.11 +0.9
1,391,617 - 13322 mRNA_4954 0.12 +0.8
1,391,620 + 13322 mRNA_4954 0.12 -0.2
1,391,627 + 13322 mRNA_4954 0.13 +1.9
1,391,723 - 13322 mRNA_4954 0.23 +1.2
1,391,728 + 13322 mRNA_4954 0.24 -1.5
1,391,739 - 13322 mRNA_4954 0.25 +0.1
1,391,744 - 13322 mRNA_4954 0.26 +0.6
1,391,750 - 13322 mRNA_4954 0.26 -0.3
1,391,751 - 13322 mRNA_4954 0.26 +0.1
1,391,762 - 13322 mRNA_4954 0.28 -1.9
1,391,765 + 13322 mRNA_4954 0.28 +1.6
1,391,774 + 13322 mRNA_4954 0.29 -1.7
1,391,777 - 13322 mRNA_4954 0.29 -0.1
1,391,809 + 13322 mRNA_4954 0.33 +1.0
1,391,833 + 13322 mRNA_4954 0.35 +0.0
1,391,838 + 13322 mRNA_4954 0.36 +1.1
1,391,866 + 13322 mRNA_4954 0.39 -0.3
1,391,900 + 13322 mRNA_4954 0.43 -1.4
1,391,909 + 13322 mRNA_4954 0.44 -2.2
1,391,965 - 13322 mRNA_4954 0.50 +0.1
1,391,965 - 13322 mRNA_4954 0.50 -0.7
1,391,983 - 13322 mRNA_4954 0.52 +0.3
1,392,000 - 13322 mRNA_4954 0.54 +0.1
1,392,016 - 13322 mRNA_4954 0.55 +0.1
1,392,017 - 13322 mRNA_4954 0.55 +2.7
1,392,019 + 13322 mRNA_4954 0.56 +1.8
1,392,019 - 13322 mRNA_4954 0.56 +1.4
1,392,020 - 13322 mRNA_4954 0.56 -0.0
1,392,042 - 13322 mRNA_4954 0.58 +1.8
1,392,057 + 13322 mRNA_4954 0.60 -0.9
1,392,075 + 13322 mRNA_4954 0.62 -1.1
1,392,090 - 13322 mRNA_4954 0.63 -1.9
1,392,090 + 13322 mRNA_4954 0.63 -0.1
1,392,091 + 13322 mRNA_4954 0.64 -0.7
1,392,094 + 13322 mRNA_4954 0.64 +0.3
1,392,111 + 13322 mRNA_4954 0.66 +1.4
1,392,118 + 13322 mRNA_4954 0.67 -1.8
1,392,119 + 13322 mRNA_4954 0.67 -0.3
1,392,135 - 13322 mRNA_4954 0.68 +0.5
1,392,144 - 13322 mRNA_4954 0.69 +0.4
1,392,145 - 13322 mRNA_4954 0.69 -0.6
1,392,173 + 13322 mRNA_4954 0.73 +1.7
1,392,254 + 13322 mRNA_4954 0.81 +1.1
1,392,260 + 13322 mRNA_4954 0.82 -0.8
1,392,261 + 13322 mRNA_4954 0.82 +0.7
1,392,267 - 13322 mRNA_4954 0.83 +1.9
1,392,308 + 13322 mRNA_4954 0.87 -0.6
1,392,309 - 13322 mRNA_4954 0.87 +0.1
1,392,336 + +0.3
1,392,359 - +0.3
1,392,423 - +0.9
1,392,436 - -0.6
1,392,472 - +0.6
1,392,474 + +0.2
1,392,476 - -0.4
1,392,477 + +0.4
1,392,480 - +0.1
1,392,484 + +1.4
1,392,494 + -0.7
1,392,497 - +1.5
1,392,508 - -0.2
1,392,516 + +1.6
1,392,653 + -0.1
1,392,783 - -0.8
1,392,921 + -0.4
1,392,940 + +1.4
1,393,074 + -1.9

Or see this region's nucleotide sequence