Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5010

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13377 and 13378 are separated by 506 nucleotides13378 and 13379 are separated by 171 nucleotides mRNA_5009: 13377 - K07195 EXOC7, EXO70 exocyst complex component 7, at 1,531,296 to 1,533,936 13377 mRNA_5010: 13378 - K17576 PPP1R37, LRRC68 protein phosphatase 1 regulatory subunit 37, at 1,534,443 to 1,540,178 13378 mRNA_5011: 13379 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,540,350 to 1,542,527 13379

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,533,478 + 13377 mRNA_5009 0.83 -0.5
1,533,627 + 13377 mRNA_5009 0.88 -0.1
1,533,912 - -0.3
1,534,064 - -1.2
1,534,071 + +0.5
1,534,182 - -0.5
1,534,195 - +0.6
1,534,196 - +0.6
1,534,200 - +0.4
1,534,203 - +0.7
1,534,204 + -0.6
1,534,212 + +0.0
1,534,231 + -0.1
1,534,508 - +1.0
1,534,511 + +1.0
1,534,799 - +0.1
1,535,097 + 13378 mRNA_5010 0.11 +1.6
1,535,494 + 13378 mRNA_5010 0.18 -0.7
1,535,519 + 13378 mRNA_5010 0.19 -0.4
1,535,529 - 13378 mRNA_5010 0.19 +0.6
1,535,688 + 13378 mRNA_5010 0.22 +0.2
1,535,846 + 13378 mRNA_5010 0.24 -0.7
1,535,962 - 13378 mRNA_5010 0.26 -0.7
1,535,972 - 13378 mRNA_5010 0.27 +0.4
1,536,006 + 13378 mRNA_5010 0.27 +0.4
1,536,128 - 13378 mRNA_5010 0.29 -0.4
1,536,148 + 13378 mRNA_5010 0.30 +0.5
1,536,148 - 13378 mRNA_5010 0.30 +0.8
1,536,268 - 13378 mRNA_5010 0.32 -0.9
1,536,332 - 13378 mRNA_5010 0.33 -1.6
1,536,356 + 13378 mRNA_5010 0.33 -0.1
1,536,870 - 13378 mRNA_5010 0.42 -0.1
1,536,959 - 13378 mRNA_5010 0.44 -0.7
1,537,104 + 13378 mRNA_5010 0.46 +1.7
1,537,283 + 13378 mRNA_5010 0.50 -1.8
1,537,448 + 13378 mRNA_5010 0.52 +0.1
1,537,705 + 13378 mRNA_5010 0.57 +0.2
1,537,781 + 13378 mRNA_5010 0.58 -0.3
1,537,865 + 13378 mRNA_5010 0.60 -0.1
1,537,869 + 13378 mRNA_5010 0.60 +1.7
1,538,146 - 13378 mRNA_5010 0.65 +1.8
1,538,285 - 13378 mRNA_5010 0.67 +0.1
1,538,508 + 13378 mRNA_5010 0.71 -1.0
1,538,620 + 13378 mRNA_5010 0.73 -0.0
1,538,792 + 13378 mRNA_5010 0.76 -2.0
1,538,855 - 13378 mRNA_5010 0.77 -1.5
1,538,869 - 13378 mRNA_5010 0.77 -0.4
1,539,165 - 13378 mRNA_5010 0.82 -0.9
1,539,305 - 13378 mRNA_5010 0.85 -0.4
1,539,654 - -0.4
1,539,871 + +0.6
1,539,904 - -1.4
1,540,236 - +0.4
1,541,074 + 13379 mRNA_5011 0.33 -0.1
1,541,075 + 13379 mRNA_5011 0.33 -0.1
1,541,101 - 13379 mRNA_5011 0.34 +0.0
1,541,111 + 13379 mRNA_5011 0.35 -1.9

Or see this region's nucleotide sequence