Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5012

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13379 and 13380 are separated by 218 nucleotides13380 and 13381 are separated by 232 nucleotides mRNA_5011: 13379 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,540,350 to 1,542,527 13379 mRNA_5012: 13380 - K01886 QARS, glnS glutaminyl-tRNA synthetase, at 1,542,746 to 1,545,688 13380 mRNA_5013: 13381 - BLAST regulatory protein wetA [Paracoccidioides lutzii ..., at 1,545,921 to 1,548,060 13381

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,541,813 + 13379 mRNA_5011 0.67 +0.0
1,541,816 - 13379 mRNA_5011 0.67 +0.2
1,541,972 + 13379 mRNA_5011 0.74 -0.4
1,542,422 + -1.5
1,542,429 - +0.9
1,542,552 - +0.1
1,542,590 + -1.0
1,542,704 - -0.4
1,542,719 - +1.9
1,545,370 - 13380 mRNA_5012 0.89 +0.5
1,545,682 + -1.8
1,546,444 + 13381 mRNA_5013 0.24 +1.5
1,546,547 + 13381 mRNA_5013 0.29 +1.6
1,546,547 - 13381 mRNA_5013 0.29 +0.7
1,546,567 - 13381 mRNA_5013 0.30 +0.3

Or see this region's nucleotide sequence