Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5066

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13433 and 13434 are separated by 171 nucleotides13434 and 13435 are separated by 750 nucleotides mRNA_5065: 13433 - HMMPfam-Mitotic checkpoint regulator, MAD2B-interacting-PF10253, at 1,667,643 to 1,669,072 13433 mRNA_5066: 13434 - KOG3170 Conserved phosducin-like protein, at 1,669,244 to 1,670,342 13434 mRNA_5067: 13435 - Hypothetical Protein, at 1,671,093 to 1,672,541 13435

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,669,014 + -1.8
1,669,052 + -0.4
1,669,352 - +2.6
1,669,642 - 13434 mRNA_5066 0.36 +0.2
1,669,907 + 13434 mRNA_5066 0.60 +2.9
1,670,056 + 13434 mRNA_5066 0.74 +0.0
1,670,073 + 13434 mRNA_5066 0.75 +0.0
1,670,201 - 13434 mRNA_5066 0.87 +1.3
1,670,356 + +0.0
1,670,356 - +1.1
1,670,358 - -0.4
1,670,367 + -0.5
1,670,367 + -0.4
1,670,382 - -0.5
1,670,497 + +0.6
1,670,500 + -0.4
1,670,518 - +0.8
1,670,610 - +0.1
1,670,611 - +2.7
1,670,624 - +0.2
1,670,689 + +0.1
1,670,690 - -0.8
1,670,745 + +1.4
1,670,795 - -0.5
1,670,795 - +0.2
1,670,796 + +2.5
1,670,800 + -1.4
1,670,805 + -0.1
1,670,807 + +2.2
1,670,807 + -0.1
1,670,819 + +0.8
1,670,823 - -0.0
1,670,828 + +0.4
1,670,832 - -0.4
1,670,841 - -0.1
1,670,854 + +1.5
1,670,955 - -2.0
1,670,959 + +0.2
1,670,964 - +2.3
1,670,968 - -1.0
1,670,971 - +0.1
1,670,979 + -0.1
1,670,988 + -0.7
1,670,996 - -0.5
1,671,096 - +0.1
1,671,111 - -0.3
1,671,125 + +0.3

Or see this region's nucleotide sequence