Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5089

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13457 and 13458 are separated by 376 nucleotides mRNA_5089: 13457 - Hypothetical Protein, at 1,724,856 to 1,725,762 13457 mRNA_5090: 13458 - K08900 BCS1 mitochondrial chaperone BCS1, at 1,726,139 to 1,727,985 13458

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,723,915 - +0.4
1,724,171 - -0.0
1,724,199 + +0.5
1,724,199 - +0.3
1,724,207 + -1.4
1,724,490 - -0.3
1,724,495 - -0.9
1,724,575 + +0.8
1,724,835 + +1.4
1,725,077 + 13457 mRNA_5089 0.24 -1.1
1,725,216 - 13457 mRNA_5089 0.40 -0.4
1,725,542 + 13457 mRNA_5089 0.76 +0.0
1,725,587 - 13457 mRNA_5089 0.81 -1.0
1,725,617 + 13457 mRNA_5089 0.84 -0.7
1,725,643 + 13457 mRNA_5089 0.87 -0.5
1,725,668 - 13457 mRNA_5089 0.90 +0.8
1,725,882 + +1.5
1,725,965 + -1.6
1,725,974 + +0.4
1,726,019 - +0.1
1,726,083 - +3.1
1,726,106 + +0.6
1,726,119 + -0.1
1,726,126 + +0.2
1,726,132 - +1.3
1,726,173 - -0.2

Or see this region's nucleotide sequence