Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5162

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13529 and 13530 are separated by 795 nucleotides mRNA_5161: 13529 - Hypothetical Protein, at 44,917 to 45,595 13529 mRNA_5162: 13530 - Hypothetical Protein, at 46,391 to 47,176 13530

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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45,413 - 13529 mRNA_5161 0.73 +0.6
45,419 + 13529 mRNA_5161 0.74 +0.2
45,450 - 13529 mRNA_5161 0.78 -0.6
45,846 - -0.2
46,090 - +0.3
46,193 - +1.8
46,364 - +1.1
46,457 - -0.5
46,527 + 13530 mRNA_5162 0.17 -0.7
46,587 - 13530 mRNA_5162 0.25 -1.3
46,758 + 13530 mRNA_5162 0.47 +0.7
46,777 + 13530 mRNA_5162 0.49 -1.9
46,872 + 13530 mRNA_5162 0.61 -0.6
47,053 - 13530 mRNA_5162 0.84 +2.2
47,064 + 13530 mRNA_5162 0.86 -1.1
47,066 - 13530 mRNA_5162 0.86 +0.0
47,502 - -0.4
47,571 + +1.1
47,646 - +0.7
47,740 - -1.2
47,789 - -0.1
47,798 - -1.5
47,911 - +0.2
47,944 + +0.8
47,985 - -0.2
48,125 + -0.4
48,152 - -0.4

Or see this region's nucleotide sequence