Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5178

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13545 and 13546 are separated by 995 nucleotides13546 and 13547 are separated by 514 nucleotides mRNA_5177: 13545 - K07874 RAB1A Ras-related protein Rab-1A, at 81,218 to 82,188 13545 mRNA_5178: 13546 - BLAST chromatin remodeling factor subunit [Kalmanozyma ..., at 83,184 to 83,780 13546 mRNA_5179: 13547 - Hypothetical Protein, at 84,295 to 87,162 13547

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
82,601 - +0.4
82,862 + +1.0
82,916 + +0.2
83,186 + +0.1
83,211 + +0.4
83,476 - 13546 mRNA_5178 0.49 +1.6
83,486 + 13546 mRNA_5178 0.51 -0.2
83,633 + 13546 mRNA_5178 0.75 -0.6
83,655 - 13546 mRNA_5178 0.79 +0.5
83,813 + -0.3
84,092 + +1.6
84,092 - -2.4
84,330 + -1.2
84,347 - +1.7
84,390 - -0.8
84,700 - 13547 mRNA_5179 0.14 -0.8

Or see this region's nucleotide sequence