Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5225

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13592 and 13593 are separated by 264 nucleotides13593 and 13594 are separated by 344 nucleotides mRNA_5224: 13592 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 190,897 to 192,363 13592 mRNA_5225: 13593 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 192,628 to 196,368 13593 mRNA_5226: 13594 - K12472 EPS15 epidermal growth factor receptor substrate 15, at 196,713 to 201,520 13594

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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191,639 - 13592 mRNA_5224 0.51 +0.1
191,666 + 13592 mRNA_5224 0.52 -0.0
191,695 + 13592 mRNA_5224 0.54 -1.3
191,823 + 13592 mRNA_5224 0.63 -0.7
191,827 - 13592 mRNA_5224 0.63 -0.7
191,981 - 13592 mRNA_5224 0.74 +0.1
191,992 + 13592 mRNA_5224 0.75 +0.5
192,170 + 13592 mRNA_5224 0.87 -2.1
192,188 + 13592 mRNA_5224 0.88 +0.3
192,191 + 13592 mRNA_5224 0.88 +0.2
192,194 + 13592 mRNA_5224 0.88 -0.2
192,200 - 13592 mRNA_5224 0.89 -1.6
192,255 + +1.4
192,276 - +1.2
192,289 - -0.5
192,290 + -1.2
192,416 - -1.6
192,423 - -0.9
192,433 - -0.1
192,435 + -2.1
192,439 - +3.2
192,500 + +0.2
192,609 - +0.5
192,714 + +1.1
192,763 - +0.8
192,876 + +1.7
193,022 + 13593 mRNA_5225 0.11 -0.0
193,032 - 13593 mRNA_5225 0.11 -3.0
193,053 + 13593 mRNA_5225 0.11 -0.2
193,193 + 13593 mRNA_5225 0.15 -0.7
193,281 - 13593 mRNA_5225 0.17 -0.1
193,295 - 13593 mRNA_5225 0.18 +0.7
193,396 + 13593 mRNA_5225 0.21 +1.7
193,648 + 13593 mRNA_5225 0.27 +0.5
193,724 + 13593 mRNA_5225 0.29 -0.6
194,037 + 13593 mRNA_5225 0.38 +2.3
194,083 + 13593 mRNA_5225 0.39 +0.2
194,085 - 13593 mRNA_5225 0.39 +2.7
194,231 - 13593 mRNA_5225 0.43 -0.8
194,266 + 13593 mRNA_5225 0.44 +0.8
194,359 - 13593 mRNA_5225 0.46 -0.7
194,536 + 13593 mRNA_5225 0.51 -0.6
194,596 - 13593 mRNA_5225 0.53 -1.1
194,647 - 13593 mRNA_5225 0.54 +0.5
194,652 + 13593 mRNA_5225 0.54 +1.4
194,671 - 13593 mRNA_5225 0.55 -0.0
194,677 + 13593 mRNA_5225 0.55 +0.6
194,760 + 13593 mRNA_5225 0.57 -0.2
194,905 - 13593 mRNA_5225 0.61 +0.4
194,915 + 13593 mRNA_5225 0.61 -0.5
195,068 + 13593 mRNA_5225 0.65 -0.2
195,098 - 13593 mRNA_5225 0.66 -1.2
195,228 + 13593 mRNA_5225 0.70 -0.8
195,323 - 13593 mRNA_5225 0.72 +0.9
195,362 - 13593 mRNA_5225 0.73 -1.7
195,474 - 13593 mRNA_5225 0.76 -0.1
195,477 + 13593 mRNA_5225 0.76 +0.1
195,629 + 13593 mRNA_5225 0.80 +0.9
195,639 + 13593 mRNA_5225 0.80 -0.2
195,841 + 13593 mRNA_5225 0.86 -0.4
195,844 - 13593 mRNA_5225 0.86 +0.3
195,871 + 13593 mRNA_5225 0.87 +0.6
195,939 + 13593 mRNA_5225 0.89 +0.6
196,229 - -1.1
196,229 - -1.5
196,568 - -0.4
196,726 - +1.5
196,737 + -0.9
196,746 + -0.3
196,860 + -1.9
196,993 - -0.4
197,000 + -0.9
197,011 - -1.2
197,013 - +0.4
197,143 - -1.0
197,281 + 13594 mRNA_5226 0.12 -0.7

Or see this region's nucleotide sequence