Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5292

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13659 and 13660 are separated by 624 nucleotides13660 and 13661 are separated by 493 nucleotides mRNA_5291: 13659 - K00799 GST, gst glutathione S-transferase, at 370,278 to 371,436 13659 mRNA_5292: 13660 - Hypothetical Protein, at 372,061 to 373,005 13660 mRNA_5293: 13661 - Hypothetical Protein, at 373,499 to 378,247 13661

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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371,347 + -0.0
371,368 + -0.1
371,380 - +0.7
371,442 + -0.9
371,517 - -1.5
371,636 - +0.7
371,638 - +0.2
371,642 - -0.3
371,643 + -0.6
371,646 + -0.8
371,668 + +0.2
371,670 - +0.2
371,672 + +1.7
371,727 - -0.9
371,728 - -1.0
371,729 + +0.1
371,735 - -0.1
371,736 + -0.3
371,736 + +0.7
371,745 + -0.1
371,746 + -0.5
371,748 - +0.1
371,751 + +0.0
371,751 + -0.3
371,756 + +0.9
371,757 - -0.4
371,782 - -0.5
371,783 - +1.3
371,806 + -0.7
371,895 - -1.3
371,904 - -0.7
371,984 - +0.7
371,990 + +0.1
372,000 + -0.1
372,005 + +0.4
372,008 - +0.1
372,014 + +1.1
372,051 + -2.8
372,067 + +0.2
372,068 - +0.4
372,109 - -0.1
372,125 - +0.7
372,155 + +0.3
372,290 + 13660 mRNA_5292 0.24 +0.2
372,409 - 13660 mRNA_5292 0.37 +0.3
372,435 + 13660 mRNA_5292 0.40 -0.5
372,438 - 13660 mRNA_5292 0.40 +0.3
372,585 - 13660 mRNA_5292 0.55 -0.2
372,589 + 13660 mRNA_5292 0.56 -0.1
372,692 + 13660 mRNA_5292 0.67 -0.7
372,701 - 13660 mRNA_5292 0.68 -0.1
372,717 - 13660 mRNA_5292 0.69 +1.8
372,721 + 13660 mRNA_5292 0.70 +0.6
372,730 - 13660 mRNA_5292 0.71 +1.7
372,730 + 13660 mRNA_5292 0.71 -1.3
372,745 - 13660 mRNA_5292 0.72 +1.2
372,840 + 13660 mRNA_5292 0.82 +2.1
372,843 - 13660 mRNA_5292 0.83 -0.1
372,850 + 13660 mRNA_5292 0.83 +0.1
372,860 + 13660 mRNA_5292 0.85 +0.0
372,876 + 13660 mRNA_5292 0.86 +0.1
372,933 + -0.2
372,988 - -1.9
373,016 - -0.4
373,018 - +1.9
373,023 + -1.7
373,031 + +1.0
373,037 - -0.3
373,040 + +0.3
373,053 + -0.2
373,076 + +0.0
373,108 + -0.8
373,164 - -0.7
373,170 + -0.9
373,191 - -0.0
373,192 + +0.6
373,202 + +0.3
373,213 + -0.7
373,213 + +1.9
373,220 - -2.7
373,222 + +0.0
373,347 + +0.1
373,350 + -2.1
373,368 + +1.6
373,623 - -0.5
373,743 + -0.2
373,827 + +0.2

Or see this region's nucleotide sequence