Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5308

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13675 and 13676 are separated by 116 nucleotides13676 and 13677 are separated by 222 nucleotides mRNA_5307: 13675 - KOG3769 Ribonuclease III domain proteins, at 419,822 to 421,852 13675 mRNA_5308: 13676 - Hypothetical Protein, at 421,969 to 422,926 13676 mRNA_5309: 13677 - KOG0628 Aromatic-L-amino-acid/L-histidine decarboxylase, at 423,149 to 425,154 13677

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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421,911 - -0.9
421,918 + +0.4
421,923 - +0.4
421,933 + -0.7
421,934 + -0.4
421,940 - +0.2
421,943 + +0.3
422,063 + -0.8
422,066 + 13676 mRNA_5308 0.10 -0.5
422,071 - 13676 mRNA_5308 0.11 +0.8
422,071 - 13676 mRNA_5308 0.11 +1.4
422,077 - 13676 mRNA_5308 0.11 +0.7
422,079 - 13676 mRNA_5308 0.11 -2.0
422,105 - 13676 mRNA_5308 0.14 +0.5
422,240 + 13676 mRNA_5308 0.28 +1.3
422,242 + 13676 mRNA_5308 0.28 +0.0
422,275 + 13676 mRNA_5308 0.32 +0.5
422,520 + 13676 mRNA_5308 0.58 +0.9
422,761 - 13676 mRNA_5308 0.83 -1.1
423,117 + +0.5
423,285 + +1.1
423,411 - 13677 mRNA_5309 0.13 -0.6
423,648 + 13677 mRNA_5309 0.25 -3.3
423,669 + 13677 mRNA_5309 0.26 -0.8
423,878 - 13677 mRNA_5309 0.36 -0.3

Or see this region's nucleotide sequence