Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5326

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13693 and 13694 are separated by 288 nucleotides13694 and 13695 are separated by 251 nucleotides mRNA_5325: 13693 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF52266, at 459,771 to 461,459 13693 mRNA_5326: 13694 - K00020 mmsB, HIBADH 3-hydroxyisobutyrate dehydrogenase, at 461,748 to 463,259 13694 mRNA_5327: 13695 - Hypothetical Protein, at 463,511 to 464,845 13695

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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461,425 - +0.1
461,809 + +0.1
461,834 - +1.3
461,835 + -0.2
461,961 - 13694 mRNA_5326 0.14 +0.3
462,252 + 13694 mRNA_5326 0.33 -0.6
462,257 - 13694 mRNA_5326 0.34 +1.7
462,343 + 13694 mRNA_5326 0.39 -1.2
462,432 - 13694 mRNA_5326 0.45 -0.6
462,537 - 13694 mRNA_5326 0.52 +1.5
462,709 + 13694 mRNA_5326 0.64 -0.7
462,803 + 13694 mRNA_5326 0.70 -1.4
462,828 + 13694 mRNA_5326 0.71 -0.7
462,853 - 13694 mRNA_5326 0.73 -0.0
462,965 - 13694 mRNA_5326 0.80 -0.3
462,999 + 13694 mRNA_5326 0.83 +0.3
463,017 + 13694 mRNA_5326 0.84 -0.7
463,094 - 13694 mRNA_5326 0.89 +1.1
463,135 + -0.9
463,292 - -0.9
463,309 - -2.3
463,336 - -0.3
463,478 + +1.8
463,501 - -1.0
463,602 + +0.8
463,627 + -0.8
463,790 + 13695 mRNA_5327 0.21 +1.0
464,013 + 13695 mRNA_5327 0.38 -0.7
464,163 - 13695 mRNA_5327 0.49 -0.3

Or see this region's nucleotide sequence