Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5375

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13743 and 13744 are separated by 124 nucleotides mRNA_5375: 13743 - Hypothetical Protein, at 578,349 to 578,853 13743 mRNA_5376: 13744 - Hypothetical Protein, at 578,978 to 581,367 13744

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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578,346 + +0.8
578,494 + 13743 mRNA_5375 0.29 -0.1
578,497 - 13743 mRNA_5375 0.29 +0.5
578,538 - 13743 mRNA_5375 0.37 -0.8
578,678 - 13743 mRNA_5375 0.65 -0.1
578,750 + 13743 mRNA_5375 0.79 -0.6
578,949 + -0.6
579,104 + -1.3
579,256 - 13744 mRNA_5376 0.12 +0.3
579,522 - 13744 mRNA_5376 0.23 +0.7
579,679 + 13744 mRNA_5376 0.29 -0.8
579,759 + 13744 mRNA_5376 0.33 +0.2

Or see this region's nucleotide sequence