Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5396

Experiment: 40 hrs High Buoyancy

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	Sysname	Fraction	40 hrs High Buoyancy
1,103	-				+0.8
1,110	+				-0.7
1,245	-	13763	mRNA_5395	0.11	+0.3
1,260	-	13763	mRNA_5395	0.13	-1.2
1,376	-	13763	mRNA_5395	0.27	+1.1
1,438	+	13763	mRNA_5395	0.34	-0.4
1,438	+	13763	mRNA_5395	0.34	-0.6
1,438	+	13763	mRNA_5395	0.34	-0.3
1,523	+	13763	mRNA_5395	0.44	+0.1
1,528	-	13763	mRNA_5395	0.45	-0.7
1,533	+	13763	mRNA_5395	0.45	-1.0
1,538	+	13763	mRNA_5395	0.46	+2.5
1,538	-	13763	mRNA_5395	0.46	+1.1
1,556	+	13763	mRNA_5395	0.48	-0.9
1,639	+	13763	mRNA_5395	0.58	-0.5
1,854	-	13763	mRNA_5395	0.83	+0.3
1,855	-	13763	mRNA_5395	0.83	-0.7
1,887	-	13763	mRNA_5395	0.87	+0.2
1,908	-	13763	mRNA_5395	0.89	-0.9
2,000	-				-0.1
2,009	+				+1.4
2,093	+				-0.4
2,125	-				+0.9
2,156	-				+0.1
2,162	+				+0.7
2,397	+				+2.4
2,412	+				-0.0
2,570	+	13764	mRNA_5396	0.13	-0.7
2,586	+	13764	mRNA_5396	0.13	-1.0
2,594	-	13764	mRNA_5396	0.14	+1.0
2,597	+	13764	mRNA_5396	0.14	+0.5
2,661	+	13764	mRNA_5396	0.15	-0.1
2,773	+	13764	mRNA_5396	0.18	-2.1
2,847	-	13764	mRNA_5396	0.20	+1.1
2,895	-	13764	mRNA_5396	0.22	+0.0
2,923	+	13764	mRNA_5396	0.22	+0.4
3,029	+	13764	mRNA_5396	0.25	-2.9
3,054	+	13764	mRNA_5396	0.26	+0.5
3,088	+	13764	mRNA_5396	0.27	-0.2
3,167	+	13764	mRNA_5396	0.29	+1.1
3,171	+	13764	mRNA_5396	0.29	+1.9
3,175	+	13764	mRNA_5396	0.29	-0.6
3,216	+	13764	mRNA_5396	0.30	+2.6
3,230	+	13764	mRNA_5396	0.31	-0.8
3,295	-	13764	mRNA_5396	0.33	+0.1
3,301	+	13764	mRNA_5396	0.33	-0.8
3,304	-	13764	mRNA_5396	0.33	+1.6
3,319	+	13764	mRNA_5396	0.33	-2.1
3,449	-	13764	mRNA_5396	0.37	+1.9
3,457	-	13764	mRNA_5396	0.37	+0.5
3,584	+	13764	mRNA_5396	0.40	-0.0
3,693	-	13764	mRNA_5396	0.43	-0.7
3,693	-	13764	mRNA_5396	0.43	-2.9
3,699	+	13764	mRNA_5396	0.43	+0.3
3,743	+	13764	mRNA_5396	0.45	+4.0
3,798	+	13764	mRNA_5396	0.46	+2.4
3,857	-	13764	mRNA_5396	0.48	+0.1
3,863	-	13764	mRNA_5396	0.48	-0.3
3,870	+	13764	mRNA_5396	0.48	-1.4
3,872	-	13764	mRNA_5396	0.48	-0.5
3,875	+	13764	mRNA_5396	0.48	-0.6
3,878	+	13764	mRNA_5396	0.48	+1.5
3,897	+	13764	mRNA_5396	0.49	+0.2
3,927	+	13764	mRNA_5396	0.50	+0.6
3,930	-	13764	mRNA_5396	0.50	-0.1
4,056	+	13764	mRNA_5396	0.53	+1.7
4,164	-	13764	mRNA_5396	0.56	+0.6
4,184	-	13764	mRNA_5396	0.57	+1.2
4,186	+	13764	mRNA_5396	0.57	+0.6
4,191	+	13764	mRNA_5396	0.57	+0.5
4,377	-	13764	mRNA_5396	0.62	-1.2
4,392	+	13764	mRNA_5396	0.62	+0.1
4,465	-	13764	mRNA_5396	0.64	+0.6
4,577	-	13764	mRNA_5396	0.67	-0.6
4,656	-	13764	mRNA_5396	0.69	+0.5
4,693	+	13764	mRNA_5396	0.70	-1.1
4,707	-	13764	mRNA_5396	0.71	+0.8
4,755	+	13764	mRNA_5396	0.72	-0.4
4,762	+	13764	mRNA_5396	0.72	-0.1
4,794	+	13764	mRNA_5396	0.73	-0.4
4,888	-	13764	mRNA_5396	0.76	+1.8
4,909	-	13764	mRNA_5396	0.76	-0.0
4,913	+	13764	mRNA_5396	0.76	-2.8
4,984	+	13764	mRNA_5396	0.78	-0.7
5,076	+	13764	mRNA_5396	0.81	-1.4
5,203	-	13764	mRNA_5396	0.84	+0.3
5,351	-	13764	mRNA_5396	0.88	+0.5
5,370	-	13764	mRNA_5396	0.89	-0.7
5,384	-	13764	mRNA_5396	0.89	-1.3
5,504	+				+0.1
5,508	+				-0.8
5,520	-				+1.0
5,614	+				-1.9
5,614	+				-1.0
5,635	+				-0.3
5,647	+				-0.1
5,679	+				+0.7
5,793	-				-1.5
5,794	+				+0.5
5,795	-				-0.2
5,797	-				+0.5
5,801	+				+1.0
5,969	+				-0.6
5,970	+				-2.5
6,077	-				-0.6
6,196	+				-0.2
6,223	-				-0.9
6,240	-				-0.2
6,484	+	13765	mRNA_5397	0.24	-0.2
6,575	-	13765	mRNA_5397	0.30	-0.4
6,621	+	13765	mRNA_5397	0.33	+0.7
6,632	-	13765	mRNA_5397	0.34	-1.7
6,685	-	13765	mRNA_5397	0.37	+0.6