Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5446

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13813 and 13814 are separated by 649 nucleotides13814 and 13815 are separated by 30 nucleotides mRNA_5445: 13813 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 110,701 to 112,520 13813 mRNA_5446: 13814 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 113,170 to 113,689 13814 mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113,720 to 116,134 13815

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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112,283 + 13813 mRNA_5445 0.87 +0.0
112,286 - 13813 mRNA_5445 0.87 +0.2
112,504 + -1.6
112,518 - +1.7
112,536 - -0.7
112,597 - -0.3
112,668 + -1.5
112,833 - +0.9
112,834 - +0.0
112,845 - -0.7
112,873 + -1.1
112,893 + -0.8
112,981 - +0.3
112,996 - -0.7
113,026 - -0.0
113,721 - +0.3
113,845 + -0.5
113,850 - -0.0
113,855 + -0.8
113,882 + -0.4
113,993 - 13815 mRNA_5447 0.11 +2.3
114,144 - 13815 mRNA_5447 0.18 -0.3
114,405 - 13815 mRNA_5447 0.28 +0.3
114,405 + 13815 mRNA_5447 0.28 +0.3
114,447 + 13815 mRNA_5447 0.30 +0.3
114,488 + 13815 mRNA_5447 0.32 +0.5
114,594 + 13815 mRNA_5447 0.36 +0.9

Or see this region's nucleotide sequence