Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5525

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13892 and 13893 are separated by 852 nucleotides13893 and 13894 are separated by 239 nucleotides mRNA_5524: 13892 - KOG3002 Zn finger protein, at 297,072 to 298,317 13892 mRNA_5525: 13893 - HMMPfam-Xyloglucan fucosyltransferase-PF03254, at 299,170 to 301,469 13893 mRNA_5526: 13894 - K00052 leuB 3-isopropylmalate dehydrogenase, at 301,709 to 303,276 13894

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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298,175 - 13892 mRNA_5524 0.89 -0.0
298,317 + +0.1
298,500 + +0.7
298,517 + +0.2
298,646 + +0.6
298,934 + +1.0
299,046 - +0.6
299,058 - -1.5
299,061 + +0.5
299,071 + -1.1
299,071 + +0.7
299,071 + +0.6
299,074 + -1.4
299,120 - +0.0
299,128 - -2.0
299,257 - -0.1
299,264 - +1.1
299,278 - +0.0
299,414 - 13893 mRNA_5525 0.11 +0.8
299,462 + 13893 mRNA_5525 0.13 -0.6
299,518 - 13893 mRNA_5525 0.15 +0.0
299,525 + 13893 mRNA_5525 0.15 +0.1
299,577 - 13893 mRNA_5525 0.18 +1.5
299,579 + 13893 mRNA_5525 0.18 -0.7
299,587 + 13893 mRNA_5525 0.18 -0.3
299,730 + 13893 mRNA_5525 0.24 -0.3
299,873 - 13893 mRNA_5525 0.31 +0.2
300,005 - 13893 mRNA_5525 0.36 -2.0
300,008 + 13893 mRNA_5525 0.36 -0.8
300,141 - 13893 mRNA_5525 0.42 +1.0
300,277 + 13893 mRNA_5525 0.48 -0.5
300,296 - 13893 mRNA_5525 0.49 +0.3
300,296 - 13893 mRNA_5525 0.49 -0.0
300,301 - 13893 mRNA_5525 0.49 +0.1
300,427 + 13893 mRNA_5525 0.55 -0.1
300,584 - 13893 mRNA_5525 0.61 +0.4
300,608 - 13893 mRNA_5525 0.63 +1.1
300,759 - 13893 mRNA_5525 0.69 +0.8
300,818 - 13893 mRNA_5525 0.72 -0.4
300,892 - 13893 mRNA_5525 0.75 -1.1
300,929 - 13893 mRNA_5525 0.76 -0.3
300,943 + 13893 mRNA_5525 0.77 -0.1
301,041 - 13893 mRNA_5525 0.81 +0.1
301,058 + 13893 mRNA_5525 0.82 -1.2
301,064 - 13893 mRNA_5525 0.82 +1.1
301,161 + 13893 mRNA_5525 0.87 -1.6
301,474 - -0.5
301,774 + +0.2

Or see this region's nucleotide sequence