Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5586

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13954 and 13955 are separated by 234 nucleotides mRNA_5586: 13954 - HMMPfam-Response regulator receiver domain-PF00072,HMMPfam-Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase-PF02518,ProSiteProfiles-Response regulatory domain profile.-PS50110,SMART-cheY-homologous receiver domain-SM00448,SUPERFAMILY--SSF52172,SUPERFAMILY--SSF55874, at 440,845 to 442,225 13954 mRNA_5587: 13955 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 442,460 to 444,934 13955

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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439,895 + +0.2
439,895 + +0.1
440,058 + +1.1
440,084 - -0.8
440,098 + -1.5
440,129 - -0.8
440,166 - -1.0
440,205 + -0.5
440,208 + -0.6
440,212 - -0.3
440,237 - -1.9
440,238 - -0.8
440,242 - +0.0
440,373 - +1.7
440,374 - +1.4
440,436 - +0.4
440,441 + -0.5
440,451 - +0.5
440,463 - +0.3
440,560 - -1.2
440,566 - -0.3
440,572 - -2.1
440,587 - -0.6
440,591 - +1.3
440,593 - +0.9
440,598 + +0.6
440,750 + -1.7
440,781 - +0.4
440,828 - +1.8
440,887 + +2.3
440,903 + +0.6
441,047 + 13954 mRNA_5586 0.15 +0.5
441,047 + 13954 mRNA_5586 0.15 -0.2
441,162 + 13954 mRNA_5586 0.23 +1.7
441,174 + 13954 mRNA_5586 0.24 -0.5
441,192 - 13954 mRNA_5586 0.25 -0.0
441,192 + 13954 mRNA_5586 0.25 +1.0
441,194 + 13954 mRNA_5586 0.25 -0.3
441,200 - 13954 mRNA_5586 0.26 +1.3
441,200 + 13954 mRNA_5586 0.26 -0.4
441,206 - 13954 mRNA_5586 0.26 -1.7
441,210 - 13954 mRNA_5586 0.26 -0.9
441,211 + 13954 mRNA_5586 0.27 +0.8
441,221 + 13954 mRNA_5586 0.27 -0.5
441,225 + 13954 mRNA_5586 0.28 -0.8
441,227 - 13954 mRNA_5586 0.28 +0.4
441,238 + 13954 mRNA_5586 0.28 -2.3
441,238 + 13954 mRNA_5586 0.28 +0.5
441,356 + 13954 mRNA_5586 0.37 +1.0
441,679 - 13954 mRNA_5586 0.60 +0.6
441,683 + 13954 mRNA_5586 0.61 -0.2
442,074 + 13954 mRNA_5586 0.89 -1.0
442,339 - -1.0
442,397 + -0.0
442,398 + +1.0
442,400 + -0.9
442,401 - +1.0
442,408 + -0.5
442,419 - -2.9
442,425 - +0.0
442,539 - -0.7
442,544 - +0.8
442,557 - -0.3

Or see this region's nucleotide sequence