Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5641

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14008 and 14009 are separated by 161 nucleotides14009 and 14010 are separated by 304 nucleotides mRNA_5640: 14008 - BLAST putative acyl- dehydrogenase [Moniliophthora rore..., at 574,642 to 575,900 14008 mRNA_5641: 14009 - K02879 RP-L17, MRPL17, rplQ large subunit ribosomal protein L17, at 576,062 to 577,225 14009 mRNA_5642: 14010 - Interpro Mitochondrial inner-membrane-bound regulator, at 577,530 to 579,606 14010

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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575,179 - 14008 mRNA_5640 0.43 -0.8
575,669 + 14008 mRNA_5640 0.82 -0.2
575,796 - +3.4
575,826 - -0.2
577,280 + -1.5
577,966 - 14010 mRNA_5642 0.21 -0.5

Or see this region's nucleotide sequence