Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5648

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14015 and 14016 are separated by 186 nucleotides14016 and 14017 are separated by 688 nucleotides mRNA_5647: 14015 - KOG4719 Nuclear pore complex protein, at 588,479 to 592,654 14015 mRNA_5648: 14016 - K11268 ESCO, ECO1 N-acetyltransferase, at 592,841 to 594,405 14016 mRNA_5649: 14017 - SUPERFAMILY--SSF52047, at 595,094 to 596,616 14017

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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592,210 - 14015 mRNA_5647 0.89 -1.7
592,299 - -0.7
592,319 - -1.0
592,394 - +0.5
592,445 - -1.7
592,549 - -1.4
592,693 - +0.4
592,723 + -0.4
592,771 + +0.3
593,125 + 14016 mRNA_5648 0.18 -2.1
593,637 + 14016 mRNA_5648 0.51 +2.5
594,511 + -1.6
594,646 + +1.4
594,662 + +1.0
594,670 + +0.3
594,920 - +1.8
594,964 - -0.4
594,983 - -0.9
595,152 + +0.3
595,385 - 14017 mRNA_5649 0.19 -2.9
595,404 - 14017 mRNA_5649 0.20 -0.4

Or see this region's nucleotide sequence