Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5679

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14046 and 14047 are separated by 343 nucleotides14047 and 14048 are separated by 223 nucleotides mRNA_5678: 14046 - K06005 SAP candidapepsin, at 673,852 to 675,422 14046 mRNA_5679: 14047 - KOG1944 Peroxisomal membrane protein MPV17 and related proteins, at 675,766 to 676,852 14047 mRNA_5680: 14048 - Hypothetical Protein, at 677,076 to 678,500 14048

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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674,811 - 14046 mRNA_5678 0.61 +0.1
674,817 - 14046 mRNA_5678 0.61 -1.2
674,818 + 14046 mRNA_5678 0.61 -1.2
675,042 + 14046 mRNA_5678 0.76 +1.2
675,095 + 14046 mRNA_5678 0.79 +1.6
675,215 - 14046 mRNA_5678 0.87 +2.1
675,492 + +0.5
675,542 + -2.3
675,585 - +0.7
675,654 + +1.9
676,395 + 14047 mRNA_5679 0.58 +0.1
676,815 + +1.6
676,819 + -1.5
676,839 + -0.0
676,952 + +0.1
676,960 - -1.8
676,966 + -0.8
676,979 + +1.5
676,979 - +0.7
676,984 - -0.5
676,985 + +0.4
676,991 - -1.8
677,097 + -1.1
677,101 + -0.0
677,125 + +0.0
677,244 - 14048 mRNA_5680 0.12 -0.7
677,416 - 14048 mRNA_5680 0.24 +0.6
677,561 - 14048 mRNA_5680 0.34 -0.3

Or see this region's nucleotide sequence