Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5698

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14065 and 14066 are separated by 811 nucleotides14066 and 14067 are separated by 449 nucleotides mRNA_5697: 14065 - K14568 EMG1, NEP1 rRNA small subunit pseudouridine methyltransferase Nep1, at 712,124 to 713,421 14065 mRNA_5698: 14066 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 714,233 to 715,636 14066 mRNA_5699: 14067 - HMMPfam-Vault protein inter-alpha-trypsin domain-PF08487,HMMPfam-von Willebrand factor type A domain-PF13768,ProSiteProfiles-VWFA domain profile.-PS50234,ProSiteProfiles-VIT domain profile.-PS51468,SMART-von Willebrand factor (vWF) type A domain-SM00327,SMART-Vault protein Inter-alpha-Trypsin domain-SM00609,SUPERFAMILY--SSF53300, at 716,086 to 718,925 14067

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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713,433 + -1.6
713,539 + +0.0
713,702 - +1.0
713,823 - +0.4
713,825 - -0.1
713,838 + -1.3
713,998 + -0.3
714,007 - -1.0
714,013 + +3.0
714,016 - -1.3
714,016 - +0.0
714,017 + -0.4
714,195 + -1.3
714,450 - 14066 mRNA_5698 0.15 +0.3
714,496 + 14066 mRNA_5698 0.19 -1.4
715,684 - +0.1
715,920 - -0.3

Or see this region's nucleotide sequence