Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5755

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14123 and 14124 are separated by 353 nucleotides mRNA_5755: 14123 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 868,685 to 870,428 14123 mRNA_5756: 14124 - HMMPfam-Myb-like DNA-binding domain-PF00249,ProSiteProfiles-Myb-like domain profile.-PS50090,ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 870,782 to 872,057 14124

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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867,691 - -1.9
867,713 + +0.4
867,722 + -0.1
867,727 - -2.3
867,731 + -0.3
867,741 - +1.1
867,741 - +1.0
867,742 + -0.3
867,742 + -0.6
867,745 + -0.2
867,746 + -0.6
867,749 + -0.9
867,750 - -0.2
867,762 - -0.1
867,766 - +0.8
867,769 + -2.2
867,880 + +1.9
867,906 + +1.6
868,162 + -1.5
868,173 - +1.0
868,203 + +1.1
868,617 + +0.5
868,777 + +1.1
868,793 + -1.1
868,796 - -1.1
868,921 + 14123 mRNA_5755 0.14 +1.3
868,925 - 14123 mRNA_5755 0.14 +0.9
868,927 + 14123 mRNA_5755 0.14 -1.2
868,943 - 14123 mRNA_5755 0.15 +0.3
868,959 + 14123 mRNA_5755 0.16 +2.1
868,973 - 14123 mRNA_5755 0.17 +0.5
869,086 + 14123 mRNA_5755 0.23 -1.1
869,816 - 14123 mRNA_5755 0.65 +0.2
869,818 - 14123 mRNA_5755 0.65 -0.3
869,848 + 14123 mRNA_5755 0.67 +0.1
869,983 - 14123 mRNA_5755 0.74 +0.9
870,019 - 14123 mRNA_5755 0.76 +0.4
870,246 - 14123 mRNA_5755 0.90 +0.3
870,268 + -1.9
870,308 - -0.4
870,414 - +2.4
870,535 - -1.6
870,682 - -1.1
870,722 + -0.2
870,724 + -0.1
870,726 + +0.5
870,751 + -0.2
870,787 + -0.8
870,876 + -0.6
870,881 - -0.4
871,154 - 14124 mRNA_5756 0.29 +0.2

Or see this region's nucleotide sequence