Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5766

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14133 and 14134 are separated by 73 nucleotides14134 and 14135 are separated by 124 nucleotides mRNA_5765: 14133 - Interpro Promethin, at 888,017 to 888,883 14133 mRNA_5766: 14134 - SUPERFAMILY--SSF52058, at 888,957 to 890,660 14134 mRNA_5767: 14135 - K02606 ORC4 origin recognition complex subunit 4, at 890,785 to 894,210 14135

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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888,201 + 14133 mRNA_5765 0.21 +2.6
888,513 + 14133 mRNA_5765 0.57 -0.4
888,586 + 14133 mRNA_5765 0.66 +3.7
888,611 + 14133 mRNA_5765 0.69 +1.2
888,612 - 14133 mRNA_5765 0.69 +0.9
888,628 + 14133 mRNA_5765 0.70 +2.3
888,643 + 14133 mRNA_5765 0.72 +1.9
888,733 - 14133 mRNA_5765 0.83 +0.1
888,773 - 14133 mRNA_5765 0.87 +0.1
888,891 + +0.2
888,929 - -0.9
889,057 + -1.6
889,057 + -0.2
889,070 - -1.3
889,291 - 14134 mRNA_5766 0.20 -1.7
889,670 - 14134 mRNA_5766 0.42 -0.5
889,948 - 14134 mRNA_5766 0.58 -1.1
890,062 + 14134 mRNA_5766 0.65 -0.4
890,242 - 14134 mRNA_5766 0.75 -1.8
890,271 + 14134 mRNA_5766 0.77 -2.7
890,682 + +0.8

Or see this region's nucleotide sequence